[Freesurfer] SegmentAAN tool

External Email - Use Caution I am sending you the AAAN-nuclei.log file so you can see the error messages AAAN-nuclei.log Description: AAAN-nuclei.log ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvar

Re: [Freesurfer] NextBrain: no segment_fast or segment_fireants.py

Dear Amir, The scripts are certainly there: https://github.com/freesurfer/freesurfer/tree/dev/mri_histo_util/ERC_bayesian_segmentation/scripts Maybe it’s easier just to install the development version of FreeSurfer? Cheers, /E -- Juan Eugenio Iglesias http://www.jeiglesias.com From: freesurfer-bo

Re: [Freesurfer] SegmentAAN tool

External Email - Use Caution  Thanks for sending along the log.  We will re-test SegmentAAN with the MCRV84 setup and follow up with you. - R. On Jan 21, 2025, at 11:19, Todd L Richards wrote:External Email - Use CautionI am sending you the AAAN-

[Freesurfer] fixing/editing white matter surface

External Email - Use Caution Dear FreeSurfer Team, We are editing some longitudinal data using FreeSurfer 7.4.1. I am not sure how to fix the following issue (see the attached pictures). The white surface (blue line) almost touches the pial surface because some of the voxels are "