[Freesurfer] tkmedit does not start

External Email - Use Caution Dear all, I am writing you because I am trying to launch tkmedit on my Ubuntu computer but the program does not start. I get no errors but simply the terminal goes back to a new input line. I have Freesurfer correctly installed because I normally use fr

[Freesurfer] mri_WMHsynthseg error: Killed 9

External Email - Use Caution Hello SynthSeg Experts, I am having an issue when I run mri_WMHsynthseg. I have run the program many times before without any issues. I recently closed my terminal while updating my Mac and reopened it to run WMHsynthseg. I have seen from previous p

Re: [Freesurfer] tkmedit does not start

Hi Francesco Tkmedit has been deprecated for a *long* time. Can you try FreeView instead? Cheers Bruce -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Francesco Lomi Sent: Monday, October 7, 2024 6:50 AM To: Freesurfer support list Subject: [Freesurfer] tkm

Re: [Freesurfer] mri_WMHsynthseg error: Killed 9

Dear Ian That sounds like a RAM issue. Did you try using the crop option? Cheers, /Eugenio -- Juan Eugenio Iglesias http://www.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Johnson, Ian Date: Monday, October 7, 2024 at 11:41 To: freesurfer@nmr.mgh.harvard.edu Subje

Re: [Freesurfer] mri_WMHsynthseg error: Killed 9

External Email - Use Caution Dr. Iglesias, Let me give it a try using that addition and I'll let you know if it fails again. Best, Ian Johnson, B.A. Clinical Research Associate Division of Neurocritical Care & Emergency Neurology Yale School of Medicine E: ian.p.john...@yale.edu

[Freesurfer] error: Bad CPU type in executable WMH FreeSurfer

External Email - Use Caution Hello Free Surfer Pros, I am trying to run WMH-Synth-Seg on a different machine (2.4GHz Quad-Core Intel Core i5, Intel Iris Plus Graphics 655 1536 MB). I am getting the error message: "line 30: /Applications/freesurfer/dev/python/bin/python3: Bad CP

Re: [Freesurfer] error: Bad CPU type in executable WMH FreeSurfer

External Email - Use Caution  Please let us know the operating system name and revision running on the machine. - R. On Oct 7, 2024, at 16:13, Johnson, Ian wrote:External Email - Use CautionHello Free Surfer Pros, I am trying to run WMH-

Re: [Freesurfer] error: Bad CPU type in executable WMH FreeSurfer

External Email - Use Caution I am running Sequoia 15.0.1. From: fsbuild Sent: Monday, October 7, 2024 4:36 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] error: Bad CPU type in executable WMH FreeSurfer Please let us know the op

Re: [Freesurfer] mri_WMHsynthseg error: Killed 9

External Email - Use Caution Dr. Iglesias, I am still receiving the killed message. I am also stumped by how the platform was working for me not too long ago. I was able to run ~160 sequences recently without issue. Is there anything else I can try? Best, Ian Johnson, B.A. Cli

Re: [Freesurfer] error: Bad CPU type in executable WMH FreeSurfer

External Email - Use Caution Please send along a screenshot of what you see when you select from the upper right hand corner Apple pull down menu —> About this Mac.   You may not have the resources to run some of the python commands. After you setup the fressurfer shell environme