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What I mean is that it's a beta version, so I just wanted to make sure that I
can use these results in a publication.
Knut Jørgen Bjuland
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Freesurfer@nmr.mgh.harvard.edu
https://ma
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I recently installed freesurfer 7.4.1 on a Debian 12 system (using the
Ubuntu 22 .tar.gz). When running recon-all, I get the following error:
-bash: /opt/freesurfer/freesurfer-7.4.1/bin/recon-all: cannot execute:
required file not found
Paths are all
Is your Freesurfer Environment sourced correctly? Here is the wiki help
https://surfer.nmr.mgh.harvard.edu/fswiki/SetupConfiguration_Linux
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Gregory Book
Sent: Tuesday, April 23, 2024 9:21 AM
To: freesurfer
Subject: [Frees
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Yes, it's all sourced correctly. The output after sourcing:
bash:/opt/freesurfer/freesurfer-7.4.1$ source
$FREESURFER_HOME/SetUpFreeSurfer.sh
freesurfer-linux-ubuntu22_x86_64-7.4.1-20230614-7eb8460
Setting up environment for FreeSurf
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I also see this error which is sent to stderr:
/usr/bin/time: cannot run recon-all: No such file or directory
It seems to be something related to the time command (or bash keyword)
Is your Freesurfer Environment sourced correctly? Here is the wiki
he
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Did you try the instructions you were sent yesterday to run the actual
installer and not use the tar file (which is not an installer) ?
- R.
I would try downloading and running the actual package installer,
https://secure-w
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I did not see that message, which is why I posted again. Sorry about that!
I will try using the package installer. We're using the .tar.gz method
because it is located on a shared drive, but maybe we'll just need to
install it locally if that works.
On
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If you use a shared drive that is formatted in a way that is not
compatible with the linux (ext3, ext4) file system, e.g., a shared windows
drive, then running the linux software is not expected to work. A Windows
file system does not support soft
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Hi Freesurfer support,
I have several questions regarding recon-all -fill and -debug.
If we run recon-all -fill, what is the command set-up for that? From the
ReconAllDevTable here,
https://secure-web.cisco.com/168deFdRWVJ6rqWKdMIwjH_-sTPV9vncDkCBQh
