[Freesurfer] 7.4.1 release archive has extra directory prepended

2024-02-05 Thread Wagner, Dylan
External Email - Use Caution Hi Freesurfer, Wasn't sure where to post this as the github is more for source code issues. The 7.4.1 archives all have './' prepended to them (i.e., './freesurfer/' vs 'freesurfer/'). This is causing an issue with neurodocker as the definition file

[Freesurfer] ERROR: mri_ca_register with non-zero status 9

2024-02-05 Thread Lucas Alexis Ronat
External Email - Use Caution Hello FreeSurfer developers, I'm trying to process structural MRI (T1w.nii) using the recon-all command but I get the following error: ERROR: mri_ca_register with non-zero status 9 Similar errors have been reported but I am unable to resolve this pro

[Freesurfer] Command terminated by signal 11 when execute mris_place_surface

2024-02-05 Thread Yp Ben
External Email - Use Caution Hello FreeSurfer Developers, I'm want to run HCP T1W data of recon-all , but it always failed on step " WhitePreAparc lh", below is my run information: OS: Ubuntu 22.04.2 LTS MEM: 32G CPU: 16 Freesurfer Version: freesurfer-linux-ubuntu22_x86_64-7.4.1-

Re: [Freesurfer] Command terminated by signal 11 when execute mris_place_surface

2024-02-05 Thread fsbuild
External Email - Use Caution I would look for the core file under /var/crash as close to the time to the command failure and see what it says. Signal 11 is a segmentation violation meaning invalid memory access.  It could be that a VM on your machine does not have enough memory t

Re: [Freesurfer] Command terminated by signal 11 when execute mris_place_surface

2024-02-05 Thread Yp Ben
External Email - Use Caution Hello there, Thanks for quickly response, due to email size limit ,I can't upload dump file via email , how can I provide my dump file ? Thanks. fsbuild 于2024年2月6日周二 14:33写道: > > I would look for the core file under /var/crash as close to the time