Re: [Freesurfer] Use freeview to visualize white and pial surface

2023-08-08 Thread fsbuild
External Email - Use Caution Thank you for posting that output.  It shows you are running RHEL or Red Hat Enterprise Linux 9.1 (or the officially supported release downstream from CentOS9).  That explains why your version of mesa packages is rev 22. So your best option is to t

Re: [Freesurfer] Use freeview to visualize white and pial surface

2023-08-08 Thread DS
External Email - Use Caution Hi expert, Thanks for discussing it. I really appreciate it. That's very helpful. I have forwarded this message to admin, so that he will install it. But, I have another question. Before I visualize these images, I previously successfully loaded lh.w

Re: [Freesurfer] Use freeview to visualize white and pial surface

2023-08-08 Thread fsbuild
External Email - Use Caution  I could be wrong, but maybe that error is a function of what code path is being executed, the order of operations to render the graphics, etc.  It may not be as straightforward as either all images are going to work or none are going to work. I woul

Re: [Freesurfer] Freesurfer version and Installation

2023-08-08 Thread hmarz...@student.ubc.ca
External Email - Use Caution Hello, Thank you for your response. I have an additional question: I am utilizing Synthsr version 2.0. Is this particular version included in The 7.4.1 version of freeusrfer? Regards Hengameh From: freesurfer-boun...

Re: [Freesurfer] Freesurfer version and Installation

2023-08-08 Thread fsbuild
External Email - Use Caution  The mri_synthsr script in the 7.4.1 release from June 2023 offers 3 models - one version 1.0 model and two version 2.0 models (depending upon the arguments).  The default in the absence of any qualifying arguments is the general version 2 model. - R

[Freesurfer] followup question on computing merged volumes of both hemispheres

2023-08-08 Thread inbal paran
External Email - Use Caution By hand/matlab - simply to sum the volumes in each hemisphere? e.g., Rt. Caudate+ Lt. Caudate? - You'll have to do it by hand or maybe in matlab; you can use fast_ldtable.m to load in the tables in matlab On 8/5/2023 4:54 AM, inbal paran wrote:

[Freesurfer] Follow up question on group analysis (mri_glmfit)

2023-08-08 Thread inbal paran
External Email - Use Caution Thanks for the quick response. So I followed the steps of the tutorial and performed group analysis by running mris_preproc, then mri_surf2surf and then mri_glmfit. Is that the correct way to do that? and in this case, can I include multiple continuous

Re: [Freesurfer] Use freeview to visualize white and pial surface

2023-08-08 Thread Wang, Ruopeng
External Email - Use Caution What version of freesurfer are you using? I tried with 7.4.1 and the latest dev build, both can load these 2 files together without problem. On Aug 7, 2023, at 8:11 PM, DS mailto:zky...@126.com>> wrote: External Email - Use Caution Hi exper

Re: [Freesurfer] Use freeview to visualize white and pial surface

2023-08-08 Thread DS
External Email - Use Caution Hi expert, Thanks for your feedback. I am also using 7.4.1. I remember we previously had an issue with loading libGLU when we use 7.3.2. So, we installed 7.4.1 to fix this issue. And now I am using 7.4.1. Do you think there might be something with ot

Re: [Freesurfer] Use freeview to visualize white and pial surface

2023-08-08 Thread Wang, Ruopeng
External Email - Use Caution I don’t think this is the case since you can load 1 surface without problem. What if you load one surface from the command-line, then load the other one from the GUI? On Aug 8, 2023, at 9:45 AM, DS mailto:zky...@126.com>> wrote: External Em

Re: [Freesurfer] Use freeview to visualize white and pial surface

2023-08-08 Thread DS
External Email - Use Caution I tried to load one surface first, and there is no problem. But, after I load the second surface, the GUI was suddenly closed, and reported the same error. ../mesa-22.0.3/src/mesa/vbo/vbo_attrib_tmp.h:234:_save_Vertex3fv: Assertion `used_next <= sa

[Freesurfer] Fundi of Sulci

2023-08-08 Thread Bluye Demessie
External Email - Use Caution Dear FreeSurfers, I am hoping to do an analysis of DTI metrics within the WM at the fundi of sulci. I am working with FreeSurfer v7.4.1 and want to use the ?h.curv to isolate the bottom of the sulcus based on the most positive curvature. Since ?h.cu

Re: [Freesurfer] Use freeview to visualize white and pial surface

2023-08-08 Thread fsbuild
External Email - Use Caution   The output in your previous email lists an error from a mesa version 22 header file found on your system under mesa-22.0.3/src/mesa/vbo.  Mesa 22 implements the OpenGL 4.6 API which may not work reliably with some graphics card drivers.

Re: [Freesurfer] Use freeview to visualize white and pial surface

2023-08-08 Thread DS
External Email - Use Caution Hi expert, Thanks for your reply. I have contacted our admin to fix the installer issue, as our admin installed this FreeSurfer. But, at the same time, I try to get the version of our system by running "cat /etc/os-release", i.e. NAME="Red Hat Enter