[Freesurfer] Partnership Proposal for Freesurfer Expert Training with Universitas Indonesia

2023-07-11 Thread Pukovisa Prawiroharjo
External Email - Use Caution Dear Freesurfer Team, Greetings. My name is dr. Pukovisa Prawiroharjo, Sp.S(K), PhD. I am a lecturer and researcher at the Department of Neurology Faculty of Medicine Universitas Indonesia (UI) in Indonesia. I am pleased to inform you that we have bee

[Freesurfer] Preserving original T1w space coordinate

2023-07-11 Thread parsa...@student.ubc.ca
External Email - Use Caution Hello, Hope you are doing well. I was wondering if the parcellation process recenters the coordinates and if so, is there a way to not recenter and preserve original T1w space coordinates? Thanks, Parsa _

[Freesurfer] VM passcode

2023-07-11 Thread Haley O Higginbotham
External Email - Use Caution Hi, I am trying to set up the VM version of freesurfer. Could you send the passcode? Thanks, -HH ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f

Re: [Freesurfer] Preserving original T1w space coordinate

2023-07-11 Thread Fischl, Bruce R.,PHD
External Email - Use Caution Hi Parsa The parcellations are done on the cortical surface which exists in the individual subject "conformed" space. What do you mean by "original T1w space coordinates"? Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of par

Re: [Freesurfer] LMW and missing timepoints

2023-07-11 Thread Diers, Kersten /DZNE
External Email - Use Caution Hello, the LME model accounts for dependencies between timepoints, but does so in a flexible way: it does not require the same number of observations for each participant, nor does it require identical intervals between observations. Also including

[Freesurfer] wm-hypointensities

2023-07-11 Thread Andrew Dedinas Geoly
External Email - Use Caution Hi Freesurfer experts! I am hoping to extract the wm-hypointensity data from some recon-all-clinical runs. I was able to extract aseg.stats information correctly but noticed there was no information regarding the wm-hypointensities. Is this supporte

Re: [Freesurfer] LMW and missing timepoints

2023-07-11 Thread Lara Foland-Ross
External Email - Use Caution Wonderful. Thanks! Lara From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Diers, Kersten /DZNE Sent: Tuesday, July 11, 2023 3:08 PM To: Freesurfer support list Subject: Re: [Freesurfer] LMW and missing time