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*** Please forward to any potential candidates in your networks who may be
interested in this position ***
I am currently advertising a postdoc position (3+ years) to join my lab, the
Cognitive Hearing Lab, at UCL (London, UK). My lab combines behav
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Hello FreeSurfer developers,
I am writing to seek help regarding an issue I encountered when trying to run
the hippocampus subfields and amygdala nuclei segmentation pipeline (please see
the error message attached below).
I am running FreeSurfer V.7.
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Hi Ruifeng,
You can pass -nc (nochange) flag to mri_convert to keep the original data type.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of ruifen...@gmail.com
Sent: Thursday, May 25, 2023 2:45 PM
To: freesurfer@nmr.mgh.har
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I’ll defer to our software engineering experts, but in the meantime, you could
maybe try the Python version?
https://secure-web.cisco.com/1Cv_49AxchVd_2vIYynJ4qP6kfmnE5Dy5Tw3AuuGeUNzzOEqT7zCC8a1jFBudPBWmbpay8jscwU4QvGJDaMi2Cexs8SJBYFvrJeX-LR2OR0B-B8vsf
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Hi Lisa,
I'm sorry that I didn't make it clear.
>From what I understand, your longitudinal processing should look like the
>following:
In step 1 (cross), you should have processed each of your time points
separately, in your case, = 6008_tp1, 6008
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In your script, this line selects all 4 directories (6008, 6008_tp1, 6008_tp2,
6008_tp3)
timepoints=`ls -d1 ${subid}* | cut -d'_' -f2`
change it to
timepoints=`ls -d1 ${subid} _tp* | cut -d'_' -f2`
From: freesurfer-boun...@nmr.mgh.harvard.edu
On B
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Okay! Thank you for that. I will change the script and run the process. Prob
won't have results for some time and will check back in.
Thank you!!
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Huang, Yuji
