[Freesurfer] mri_convert mosaic dicoms

2023-03-25 Thread John Anderson
External Email - Use Caution Dear Dr Doug Greeve, For each participant in my dataset, I have 8 mosaic volumes with 36 slices each. I am trying to convert the DICOM files to Nifti format using the mri_convert command in FreeSurfer version 7.3.2. However, the conversion process fails

[Freesurfer] kvlThresholdImage: command not found

2023-03-25 Thread Song, Xinrui
External Email - Use Caution Hello Dear Developers, I am trying to segment ex vivo hemisphere brains following instructions here "https://secure-web.cisco.com/1yI3dz-T0lQE-jN1p4p6MgEh8QOPQyERm9wL9X_vVhCt5v17SaeaF7fvg6aQvDS3g022a9r0syYh6TrvyWadOQxRPpFWyqWepP1qLAsJxsvMfmNxI9vZ82Gwn