[Freesurfer] white and pial surfaces of the hippocampus

External Email - Use Caution Dear FS experts, I’d like to delineate WM and pial surfaces in the hippocampus and subsequently bin GM layers of it (like the approach that is commonly used for laminar analyses in V1 or other sensory cortices). I think the current output of recon-

[Freesurfer] Error using chol

External Email - Use Caution Hi! I am running into an issue with fast_selxavg3b. I am attempting a first level PPI analysis. The command is mkanalysis-sess -fsd bold -native -delay -2/2 -notask -TR 2 -polyfit 6 -analysis [xxx] -funcstem [xxx] -runlistfile mooneyppi.list -nuisreg m

[Freesurfer] VirtualBox pass code

External Email - Use Caution Hello, Is it possible to have the virtual box passcode sent to me? Thank you in advance! Jennifer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo

[Freesurfer] more detailed instructions for cloning voxels & confirmation that the cloning worked

External Email - Use Caution Dear FS experts, I hope this email finds you all doing well. I am trying to clone voxels back into brainmask.mgz from T1.mgz, but am struggling. I am hoping one of the FS geniuses on here might be able to help me. 1. How exactly do you do it (wha

[Freesurfer] How to get individual betas (parameter estimates) in certain ROI?

External Email - Use Caution Dear FreeSurfer Developers, Hi. Thanks to FreeSurfer, I finished a group activation analysis with FS-FAST. Now I want to draw a ROC curve to check how well my task conditions can distinguish M1 and S1. (M1 is more activated under certain condition of

[Freesurfer] Password for the FreeSurferVM

External Email - Use CautionHello,   I am asking for the Passwords of the Ubuntu 18.04 VM with FreeSurfer 7.2.0 installed.   Have a nice day, Johannes ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.har