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Hi FreeSurfer developers,
I was trying to do lesion segmentation and calculation with FreeSurfer
samseg function on my MS subjects as described here:
https://secure-web.cisco.com/1zAsxk4FzHM5NR_SkitDdzHN3p9YF3oxn6CN---kSGPRsxsLrR96AiAnRJ4jOBVfwNnpls2HB
To whom it may concern among FreeSurfer staff,
My colleagues and I have performed an analysis with FreeSurfer that is under
peer review. The reviewer has asked that we detail each atlas relied upon and
connect that with each of the statistics that we relied upon in our analysis.
The statistics
Hi James,
Did mri_annotation2label commands create lh.lobes.annot and rh.lobes.annot in
fsaverage/labels directory?
They are annot files. You can use mri_annotation2label to break them into label
files.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of James Brown
S
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Hello FreeSurfers,
I just need to know if the FSL is used in the recon-all scripts. Basically
if FSL_DIR is different will the recon-all produce different values.
Thank you
Aaron.
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Hello Jacky,
You can try the procedure listed below, which was posted to the list around
Dec. 12th. It might work for 7.3.1 release, though I have only tried it
on the 7.3.2 release. If it does not work for you on 7.3.1, then I would
download and i
Hi Jacob,
I hope this page will provide some information you are looking for -
https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation
BA/BA.thresh stats are computed with annotations created from a set of labels
included in Freesurfer.
I think by default Freesurfer uses ?h.aparc.annot
