Re: [Freesurfer] Issue with rotation during longitudinal base creation

Hi Nathan, I don’t see recon-all taking any options for mri_robust_template. You can try to run mri_robust_template on those two subjects outside recon-all. Can you send us some data to debug if it is possible? Thanks. Yujing From: Nathan Kindred (PGR) Sent: Sunday, November 20, 2022 6:35 AM

Re: [Freesurfer] Fwd: mri_robust_template - MyMatrix::RotationMean Error

Hi Andrew, Can you send us some data to debug? The link has expired. Also, the command line that you are having trouble with. Thanks. Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Andrew Beaudin Sent: Wednesday, June 29, 2022 10:45 PM To: freesurfer@nmr.mgh.harvard.edu Sub

[Freesurfer] infant_recon_all surface correction

External Email - Use Caution Dear Experts, I am working with FreeSurfer infant_recon_all and I need to correct the pial surface for most of the analyzed subjects. I would like to implement this correction by fixing the intensity normalization using control points, as well as for

Re: [Freesurfer] How to set original orientation to be sagittal view?

External Email - Use Caution Thank you so much, Douglas! It works. Best Regards Haiyun On Sun, Nov 20, 2022 at 11:45 PM Douglas N. Greve wrote: > you can try something like > mri_convert aseg.mgz --out_orientation PIL aseg.sag.nii.gz > > > > On 11/18/2022 4:31 PM, Haiyun Chen w

[Freesurfer] Ubuntu 7z Password Requst

External Email - Use Caution To Whom It May Concern: I am requesting the password for the FS_7_2_0_ubuntu_18_04_06.ova.7z file so that I can extract the .ova file. I would really appreciate it if you could send it to me! Thank you so much! Sincerely,Rebecca Wu - ___