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Dear Fs experts,
We have multiple subjects with strong/focal atrophy processed with
Freesurfer5.1
We want to re-process them to the newest version in order to have all the
capabilities/segmentations/outputs from the newest recon-all, but we do NOT
want
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Looks like your setting for SUBJECTS_DIR together with the last 2 command line
arguments,
tester /mri/norm.mgz
- is causing it to look for the path $SUBJECTS_DIR/tester/mri/aseg.mgz - which
does not exist. Or I don’t see a directory $SUBJECTS_DIR/t
Hi Padma,
It can't find the file:
/Applications/freesurfer/7.3.2/subjects/tester/mri/aseg.mgz
Are you trying to run this on a subject called sub-AD003S1059S61129? If so,
can you try:
mri_compute_volume_fractions --o test --regheader sub-AD003S1059S61129
/mri/norm.mgz
-Paul
_
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Hi Paul,
Thank you for your email. I tried how to told me
"mri_compute_volume_fractions --o test --regheader
sub-AD003S1059S61129_ /mri/norm.mgz"
I gave this command, initially it used to give the error in the starting
when it tries to load aseg,
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Freesurfer experts,
I'm trying to put some subject surfaces into a template space. I have performed
the following flirt registration per subject:
flirt -in $SUBJECTS_DIR/$CURSUBJECT/mri/T2.nii.gz -ref template0.nii.gz -omat
$SUBJECTS_DIR/$CURSUBJECT
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Hello Team,
I am trying to do only Skull stripping for my image and get the output. is
there any command of freesurfer, when it executes only the first step-
skull stripping. My objective is to get whole brain segmentation
where only the brain tissues
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Dear freesurfer,
I am a researcher at vietnam medical university.I have just downloaded
FS_7_2_0_ubuntu_18_04_06.ova.7z from your website and intend to run on
linux/ubuntu.May I know the password for unzip and whether this version of
freesurfer requ
