Re: [Freesurfer] TRACULA - preprocessing error

2022-08-20 Thread Yendiki, Anastasia
Hi Liliana - It looks like you are using a very old FreeSurfer build (from 2016) and an old TRACULA configuration file. You should update to the latest version of FreeSurfer and follow the instructions on the wiki for how to set up TRACULA. We have many more tracts now and the naming has changed

Re: [Freesurfer] primary diffusion direction & surface normal vector

2022-08-20 Thread Yendiki, Anastasia
The principal eigenvector of the tensor, which is the primary direction of diffusion, is V1. The magnitude of that vector is L1, i.e., AD. The normal vector of a surface is a vector perpendicular to the tangent plane to the surface at a certain point. It's a characteristic of a surface, rather

Re: [Freesurfer] primary diffusion direction & surface normal vector

2022-08-20 Thread Yendiki, Anastasia
https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWiki/SurfaceNormal From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Zeng, Qi Sent: Saturday, August 20, 2022 8:33 AM To: Freesurfer support list Subject: Re: [Freesurfer] primary diffusion direction &

Re: [Freesurfer] Shift in cortical parcellation, issues with previously suggested solution

2022-08-20 Thread Fischl, Bruce
Hi Carl Can you upload your subject including the central sulcus labels you drew? Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Trolle, Carl Sent: Friday, August 12, 2022 12:12 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Shift in cortical parcellation,

[Freesurfer] Password for 7.2.0 VM box virtual machine

2022-08-20 Thread Joe Romero
External Email - Use Caution I require the password to unzip the above named archive. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail i

Re: [Freesurfer] Docker for Freesurfer 7.3.2

2022-08-20 Thread fsbuild
External Email - Use Caution Hello Hudson, It should work with an existing CentOS 7, 8 or Ubuntu 18, 20, 22 OS image that you already have running in docker to download and install the freesurfer 7.3.2 .rpm or .deb package.  You just need to download the Freesurfer 7.3.2 packag