yes, that is the correct interpretation
On 7/16/2022 1:00 PM, Boa Sorte Silva, Narlon wrote:
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Dear experts,
I am conducting a group analysis and wanted to confirm that the set up
below accurately addresses our research question. Thanks for your
help, much
recon-all does not change the space to mni305 (it just "conforms" it).
On 7/26/2022 10:22 AM, Bouchra Guelib wrote:
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The problem was That I transferred my MRI to mni 305 space before the
recon-all. Still, when I read the documentation on your website, I
fo
I'm not sure what is going wrong with that. Can you look at the data?
Particilarly the norm.mgz
On 7/26/2022 9:53 AM, gianrocco wrote:
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Hi,
I attache hereby my email, as it was rejected — since I was not
registered yet to the list
Thanks again
Kind
The surface labels are independent of the coordinates.
If it is just the tal.xfm, you might be able to convert it to lta
(lta_convert), then concatenate with your other reg
(mri_concatenate_lta), then convert it back to xfm, but you're on your
own after this -- I can't spend time supporting it
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Hello Freesurfer experts!
I have been trying to send this question a few times, but it has never
shown up on the archive, so I'm not sure if it has been received. I
apologize if everyone has been receiving the same question multiple times!
I am try
Hi Danielle
I believe that the template volume has the geometry/direction cosines to use
for the output.
Note that this is an *old* binary and not really used any longer so I’m not
sure it works ☹.
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Danielle Carrol
Sent: Wednesd
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Hi,
We are recently trying to get cortical thickness from freesurfer and
converting them to 32k. A problem we notice is that after converting to
32k, all the cortical thickness values become negative. However, when we
load freesurfer thickness files in
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Hello,
I am a neuroimaging researcher and have been trying to install Freesurfer on a
Windows OS using a Virtual Machine, following the instructions below:
"Download and Run the Virtual Machine:
Ubuntu 18.04.06 compressed image with the Freesurfer 7.
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Hi Doug,
I found the solution to my problem, so please ignore my previous message.
Thanks so much for always helping out anyway.
In case, this question ever comes up for anyone else, here is the solution:
I just used freesurfer auto-recon steps to cr
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It is clear now thank you.
Le mer. 27 juil. 2022 à 14:13, Douglas N. Greve a
écrit :
> recon-all does not change the space to mni305 (it just "conforms" it).
>
> On 7/26/2022 10:22 AM, Bouchra Guelib wrote:
>
> External Email - Use Caution
>
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Hi all,
I've downloaded a new dev version of FS 7/19/2022 - and I receive an error with
running subunits:
mri_segment_hypothalamic_subunits --s 10893/
using 1 thread
/mnt/QBERT/freesurfer/python/scripts/mri_segment_hypothalamic_subunits:1023:
Depreca
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-- Forwarded message -
De : Bouchra Guelib
Date: mer. 27 juil. 2022 à 19:28
Subject: eTIV
To:
I hope you can help me with this point
I extracted the measures in 'aseg.stats', 'lh.aparc.stats',and
'rh.aparc.stats'. Now I want to use
Thanks Danielle
Let us know how it goes
Bruce
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Danielle Carrol
Sent: Wednesday, July 27, 2022 3:21 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] mri_jacobian questions
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Hi All,
I didn’t r
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