Re: [Freesurfer] MeanItensities- PET

2022-06-21 Thread Bouchra Guelib
External Email - Use Caution Hi, I want to register PET to T1 MRI using FSL dof12 then I want to extract the SUV. I would like you to help me on these lines Firstly I converted my MRI named ADNI.nii T1 to min305 space then I applied recon-all. The output is the Folder ADNI Then I w

[Freesurfer] ERROR : mri_ca_register with non-zero status 15

2022-06-21 Thread 김다운
External Email - Use Caution Hello FreeSurfer Develops, I'm attempting to run recon-all on two single subject with T1. However, I got the following error message for subject respectively: ERROR : mri_ca_register

Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-21 Thread Aaron Tanenbaum
External Email - Use Caution Are there special flags. There are differences between autorecon1 for both pipeline. Does 7.2 update some of the files like for instance the T1.mgz do to differences in the normalizations. On Sun, Jun 19, 2022, 3:55 PM Douglas N. Greve wrote: > You s

Re: [Freesurfer] using brain mask from older FreeSurfer version on a newer

2022-06-21 Thread Douglas N. Greve
no special flags. 7.2 will update all of the files, it should preserve all your edits though On 6/21/2022 7:21 AM, Aaron Tanenbaum wrote: External Email - Use Caution Are there special flags. There are differences between autorecon1 for both pipeline. Does 7.2 update some of the file

Re: [Freesurfer] mri_aparc2aseg bad incorrect ROIs

2022-06-21 Thread Benjamin Deck
External Email - Use Caution Hi Doug, Thanks for getting back to me. Yes, it's very weird. My LUT doesn't contain any subcortical structures but when I load my custom LUT into Freeview, it shows my surface-based parcellation in the subcortical regions. Furthermore, my annotation

Re: [Freesurfer] mri_label2vol fill-ribbon segmentation fault

2022-06-21 Thread Benjamin Deck
External Email - Use Caution Hi Yujing, It seems that this did not solve the issue. Are there any other reasons why this would occur? Ben On Fri, Jun 17, 2022 at 2:59 PM Benjamin Deck wrote: > Hi Yujing, > > Thank you. I will give it a try! Can documentation be updated? > > Be

Re: [Freesurfer] mri_aparc2aseg bad incorrect ROIs

2022-06-21 Thread Benjamin Deck
External Email - Use Caution Hi Doug, I think I may have found a similar issue via the mailing list which I hadn't noticed before. However, it's not clear to me how to implement this solution. https://secure-web.cisco.com/1uK1SqmLnsjHZpvlRJyITHKYUhsrOBcU7gkc7GagN0OUsbxgbuaXR7mJEm