[Freesurfer] mris_flatten distortions

External Email - Use Caution Hi all, I am trying to flatten a whole hemisphere, and i created the cut patch following the tutorials. see the result here. https://secure-web.cisco.com/1xjf27LYk5Ie25CTk51Q3cPiwVe-uMjYXB4V0ViZqlanRh7HkTXKDS-1HTcTPXJCxmT3JtXYt-sqlqTYba3y3B2xlT0j5KYd9

[Freesurfer] HRF with derivatives: results

External Email - Use Caution Hi everyone, I need some help regarding the SPM-HRF with two derivatives: Where can I find the actual function that was used for the analysis? I am mostly interested in the peak latency, but would also appreciate if I can check the other parameters o

[Freesurfer] (no subject)

External Email - Use Caution Hi all, I am trying to flatten a whole hemisphere, and i created the cut patch following the tutorials. see the result here. https://secure-web.cisco.com/1yFIFkAQ7JVCxQ9XtdXA16rgidANEj5tq1VECDMPQ70qTME3GzCmOicwUAGbxA6C2o7Wi3CSEc6CbpZnD8HYT4PmTEB2s6XS9

Re: [Freesurfer] mris_flatten distortions

Hi Alberto Usually that means that you missed some cuts and there are still attachments. Occasionally it is due to a local minimum. You can try changing the distance preservation matrix to be bigger with longer range distances. Something like -distances 20 20 (out to 20 neighbors and 20 at eac

[Freesurfer] Starting a new project

External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to develop new functions in the tool for my research activity and I wish to know if there is a guide about to start this kind of activity. 1) freesurfer-linux-ubuntu20_x86_64-7-dev.tar.gz Raffaele

Re: [Freesurfer] Starting a new project

Hi Raffaele, There is some info here: https://surfer.nmr.mgh.harvard.edu/fswiki/DevelopersGuide For more details on compiling FreeSurfer from source, you can refer to this neurodocker template: https://github.com/ReproNim/neurodocker/blob/12d0f21e119ad595ccf2487b4edc788a6e032dc3/neurodocker/temp

[Freesurfer] ubuntu vm

External Email - Use Caution Hello, I was looking to receive the passcode to unzip the virtual box file below: Freesurfer 7.2.0 release in Ubuntu 18.04.06: FS_7_2_0_Ubuntu_18_04_06.ova.7z

Re: [Freesurfer] mris_flatten distortions

External Email - Use Caution Thanks that worked perfectly. Now that I have my flat patch how can I import it in matlab for some additional plotting? Also, I read the wiki but I am not sure if and how I can import an atlas and create the annotation for the vertexes with that atlas