[Freesurfer] resample_type ignored by mri_convert with --like argument?

External Email - Use Caution Hello FS experts, I'm trying to reslice a third-party atlas into the same resolution as my data in MNI space. I am using the following command: mri_convert --like T1w_MNI.nii.gz --resample_type nearest ICBM152_2009c_AtlasWhite.nii.gz WhiteAtlas_resam

[Freesurfer] Recon-all Freezes on Parallel

External Email - Use Caution Dear FreeSurfer Team, I have been trying to use the parallel command (following FreeSurfer tutorial) to run multiple subjects (Windows os running Ubuntu VM). I only have 2 cores, so I have it set to 2 jobs instead of 8 as in the tutorial. When I use

Re: [Freesurfer] Recon-all Freezes on Parallel

External Email - Use Caution Oops, I meant to reply all: Hi R , See below, I gave 8 GB and 2 CPU in settings. [cid:f2395341-7e91-40b6-bc1c-d89bca3e4876] [cid:32cfdb7f-40af-4c07-babd-c07a17f81269] -- Joanna Eckhardt Neurosciences Graduate Program University of California, Sa

Re: [Freesurfer] Recon-all Error

External Email - Use Caution Hello Mouna, You should not need to set FREESURFER_HOME in the terminal window or source the setup script as that is already set in the environment to the pre-installed 7.2.0 release of freesurfer.  if the setup information listing FREESURFER_HOME et

Re: [Freesurfer] Recon-all Freezes on Parallel

External Email - Use Caution The VirtualBox settings indicate you host machine has 4 real and 4 virtual cores with 16G of RAM. You could try shutting down the VM, and then change the VirtualBox settings to give the VM 4 cores (instead of 2) and 12G of RAM (instead of 8G).  Then

Re: [Freesurfer] Recon-all Freezes on Parallel

External Email - Use Caution Hi R, Unfortunately, those changes did not work. It looks like it might just be too much for my computer to handle because the entire VM system slows down completely when trying to run the parallel command, and after an hour nothing new has appeared