Re: [Freesurfer] VirtualBox pass code

External Email - Use Caution Sending the info to your email shortly. - R.On Apr 27, 2022, at 21:54, JESS WOOLF wrote:   External Email - Use Caution    Hello,Will you please send me the pass code for the Virtual Box  ova.7z file?Thank you,Jess

Re: [Freesurfer] Cortical depth at each cortical voxel

External Email - Use Caution Hi Iman, That is exactly what I was looking for, thank you!! Best, Panos From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Aganj, Iman Date: Tuesday, April 26, 2022 at 9:40 AM To: Freesurfer support list Subject: [External] Re: [Freesurf

Re: [Freesurfer] FreeSurfer 7Zip archive passcode

External Email - Use Caution Dear FreeSurfer team, Thank you for providing the passwords and some instructions for the installation. However, I encountered a problem while unzipping the file. Both 7zip and WinRAR show me that something is wrong with the file or the password is

Re: [Freesurfer] FreeSurfer 7Zip archive passcode

External Email - Use Caution I will send you an alternate way to download the file. - R. On Apr 28, 2022, at 04:15, Katharina Hense wrote:External Email - Use CautionDear FreeSurfer team, Thank you for providing the pa

Re: [Freesurfer] Mri Convert Bruker MGRE files dicom to nii error

External Email - Use Caution Hi, Thanks! It works I guess. I didn't manage to use setenv in the command line before using mri_convert (command not found) But I did the following modifications and mri_convert works now (it doesn't put the error message anymore and I have the

Re: [Freesurfer] Mri Convert Bruker MGRE files dicom to nii error

Hi Mateo, I’m glad mri_convert works for you now. I’m little confused about the value ranges you saw. We map DT_SIGNED_SHORT (-32766~32766) to signed short. mri_info should give ‘type: SHORT (4)’. In Freesurfer 7.2, we don’t support DT_UINT16. We map DT_UINT16 (0~65535) to signed short. You w

Re: [Freesurfer] Mri Convert Bruker MGRE files dicom to nii error

Hi Mateo, Sorry, I’m confused by your question. Can you try to rerun mri_convert by passing it additional flag ‘--rescale-dicom’, or setting environment variable FS_RESCALE_DICOM to 1? Hope that will solve your problem. Repost your question in a different thread is a good idea since it is a di

[Freesurfer] Request for 7 zip password VM_67

External Email - Use Caution Hi, I just need a passcode to archive the zip folder for file FS_7_2_0_Ubuntu_18_04_06.ova.7z so that I can install free surfer virtual disk. Regards, Subrat ___ Freesurfer mailing list Freesurfer@nm

[Freesurfer] segmentHA_T1, mri_segstats: How can I get the PVC uptake for amygdalar nuclei?

External Email - Use Caution Hello Freesurfer Devs! I am attempting to extract the tau uptake in the amygdalar segmentations. I ran this command: mri_segstats --seg rh.hippoAmygLabels-T1.v21.FS60.FSvoxelSpace.mgz --i anat_resliced.mgz --sum rHA_stats.dat to try and calculate the