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Perfect, thank you!
Luis R. Alvarado
Graduate Student Fellow
Department of Anatomical Sciences and Neurobiology
University of Louisville
Kentucky Spinal Cord Injury Research Center
220 Abraham Flexner Way, Suite 1500
Louisville, KY 40202
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Hi FS and TRACULA experts,
I have a simple question. Do I need to replace:
setenv SUBJECTS_DIR $TUTORIAL_DATA/diffusion_tutorial/fs
with:
export SUBJECTS_DIR $TUTORIAL_DATA/diffusion_tutorial/fs
inside the TRACULA configuration file, if my shell
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Hi all,
I am also curious about this question.
Can you run TRACULA 7.2 using the outputs from FS 6.0 and 7.1.1?
If so, is it ok to run the new segmentThalamicNuclei.sh and segmentBS.sh 7.2
scripts on FS 6.0 recon data and feed that to TRACULA 7.2?
You did not send your recon-all command but my guess is that it stopped
without error because you did not include a directive (eg, -all). But in
any event, you cannot run an MT image through recon-all
On 10/29/2021 3:35 AM, Marlene Tahedl wrote:
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>
> Hi!
>
That is what I would do. The FS WM volumes are computed using the
surface, so it will be more accurate (and probably a little bigger)
On 10/29/2021 3:59 AM, Nederpelt, D.R. van (David) wrote:
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Dear SAMSEG developers,
I
To add on to that, dt_recon will register you DTI to the FreeSurfer
anatomical analysis. It will on generate FA, diffusivity, etc. I don't
know how to get that interfaced with output from MRtrix3
On 10/29/2021 5:09 PM, Mora, Jocelyn S. wrote:
Hi Reshma,
Yes, you would use the FreeSurfer Longi
