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Hi,
I was wondering if you could help me or give me more information. I have
pre-processed my MRI data using FreeSurfer version 7.0, which has been
recalled. I used the same version for the thalamic segmentation. I have
elaborated my data one year ago.
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Hello,
I'm using fmriprep's aparcaseg_dseg.nii (still FreeSurfer code, right?) to
create ROI masks. I wish to coregister and reslice this segmentation file
to match the native space for another image (PET), then extract SUVR values
for each ROI. Howeve
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What does Freesurfer do with a T2 if you do not use the t2pial flag?
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No, the RAS in fsaverage is in MNI305 space, so no need to do the
conversion.
On 9/27/2021 11:22 AM, Kennedy, Bryan wrote:
Good morning,
We are trying to conduct a meta-analysis by mapping reported MNI
dimensions (by others) on fsaverage. I know that I have to use the
following conversion:
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Thanks -R for helping me troubleshoot.
I could run the following with no error.
banikr2@banikr:~$ recon-all -s sub273 -i 273_p/273_MR.nii
I had downloaded and moved the license.txt file in:
/usr/local/freesurfer/
I hope there are no other installat
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Hi all,
I'm currently running a voxelwise whole-brain analysis on my recon-all data
using the procedure outlined here:
https://secure-web.cisco.com/1ltFRrUt9VeFo_xsJaFu_MKrnVu0LBNxjHernMBBefXqT5CCzVNrV8hZhKoZ0JnzBjvW180TesX_tU8ytDxVloUWD2g7eTNMxEdQ9
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Hi,
I am new to recon-all and Freesurfer and I am having some difficulty tracking
down the resulting outputs from when I re-run recon-all or they are not taking
hold. So far I have edited two subjects after the initial run by lowering the
ws height
