Re: [Freesurfer] Freesurfer Digest, Vol 211, Issue 32

2021-09-21 Thread Jacoby, John
Ah, thank you Anastasia! I'm glad it's that straightforward. Best, John From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of freesurfer-requ...@nmr.mgh.harvard.edu Sent: Tuesday, September 21, 2021 12:00 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Free

Re: [Freesurfer] Cortical thickness difference as vertex-label overlay

2021-09-21 Thread Graterol Pérez , José Alberto
External Email - Use Caution that seems to work. Thank you! From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Greve Sent: Sunday, September 12, 2021 11:23:33 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Cor

[Freesurfer] QDEC command not found

2021-09-21 Thread Fabiola Macruz
External Email - Use Caution Dear freesurfer experts, I have installed the freesurfer version 7.1.1 in my computer (Mac). After running the longitudinal pipeline in all the patients, I tried to open qdec for the analysis by typing qdec and the answer is "command not found".

[Freesurfer] Error in Analyze: Couldn't open PATH/sub_01/surf/lh.thickness.fwhm10.fsaverage.mgz or .mgh file.

2021-09-21 Thread Fabiola Macruz
External Email - Use Caution Dear FreeSurfer experts: I am processing in qdec 25 subjects (each with 3 MRIs studies) and I have this terminal output: Error in Analyze: Couldn't open PATH/sub_01/surf/lh.thickness.fwhm10.fsaverage.mgz or .mgh file. I have executed the following

[Freesurfer] Confusion about PATH/sub_01/surf/lh.thickness.fwhm10.fsaverage.mgh file.

2021-09-21 Thread 周冬跃
External Email - Use Caution Dear FreeSurfer experts:I use the command recon-all qcache to get file sub_01/surf/lh.thickness.fwhm10.fsaverage.mgh file.And I am confused that the cortical thickness in this file is measured in common space after sub is aligned with the common coor

Re: [Freesurfer] Migrating data from v6 to v7

2021-09-21 Thread Amanda Boyes
External Email - Use Caution Hi FreeSurfer experts, Just checking whether anyone has any advice on my query below? I would greatly appreciate any advice regarding how to incorporate masks/pial edited in v6 into the v7 pipeline. Thanks and best wishes, Amanda From: Amanda Boyes