Re: [Freesurfer] Announcing FreeSurfer version 7.2

External Email - Use Caution Hi, On 7/21/21 8:20 PM, fsbuild wrote: > External Email - Use Caution > > Hello Kiyotaka, > > Please try refreshing your copy/install of the Ubuntu 7.2.0 distribution as > the packages have been updated to fix the warning below. I ju

Re: [Freesurfer] error running samseg on cluster

Hi Rito, which freesurfer version are you using here? Andrew From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Ritobrato Datta Date: Wednesday, August 11, 2021 at 3:01 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] error running samseg on cluster External Email -

Re: [Freesurfer] about FreeSurfer QA tools errors

Hi Xin, Are you using the QA tools from https://surfer.nmr.mgh.harvard.edu/fswiki/QATools? Those are specific to FS 5.3 (we should update the wiki). v7.1 includes an executable named `qatools.py` that functions similarly. best Andrew From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of

Re: [Freesurfer] Hippocampal, thalamus and brainstem subfields: Matlab crash bump on macOS Big Sur

Thanks a bit lot, Cico. The screensaver thing blew my mind. We need to move these tools into python to avoid this type of problems. In the meantime: Andrew, do you have any ideas? Cheers, /Eugenio Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeigle

[Freesurfer] Subject with extremely large ventricles

External Email - Use Caution Hi Freesurfer Experts, Is there anything that could be done to improve the surface definitions for this particular subject (attached)? The pial and white matter boundaries  in the cortex are generally accurate though. Thank you. Best Wishes,Shane_

[Freesurfer] [Quick Question] Freeview Update

External Email - Use Caution Dear FreeSurfer team, We have half of our sample edited in Freeview V2, we wanted to updated to the latest version of Freeview, would it be a problem if the other half were to be edited in this newest version? I understand reprocessing of data shoul

Re: [Freesurfer] [Quick Question] Freeview Update

For editing it should be safe to update freeview. Ruopeng On Aug 12, 2021, at 3:20 PM, Boa Sorte Silva, Narlon mailto:narlon.si...@ubc.ca>> wrote: External Email - Use Caution Dear FreeSurfer team, We have half of our sample edited in Freeview V2, we wanted to updated to the latest

[Freesurfer] PhD Position Available @ University of Delaware: Movement Disorders/Parkinson's Disease Research

External Email - Use Caution The Motor Neuroscience and Neuroimaging Laboratory in the Department of Kinesiology and Applied Physiology at the University of Delaware (https://secure-web.cisco.com/1XTz2R8VijcqZlx4YSp9AX3X5lMJCsbG9XVQU91avZ7TSx-GYLVDjaVK212NRtIleFY2_8JSryGKwJdhHgrJ

Re: [Freesurfer] Announcing FreeSurfer version 7.2

External Email - Use Caution Hello Michael, Point taken.  The issue with the exclusion of files under the ./mni directory did not change any source code and no binaries were re-compiled.  The timestamps did change on all the files listed under https://secure-web.cisco.com/1gf9Oc

[Freesurfer] Researcher Position in Multimodal Imaging and Machine Learning @ University of California, San Francisco (UCSF),

External Email - Use Caution We seek a highly talented and motivated researcher to join UCSF/San Francisco VA to conduct project on the neural mechanisms of neurodegenerative diseases. The overarching aim of the project is to build neural models predicting clinical and pathologi

[Freesurfer] visualizing regional significant correlation with clinical traits by group

External Email - Use Caution Hi Experts, I've finished my run of generating volumetric and Tracula data for subjects. I was wondering if there is a way of displaying significant regions that correlate with clinical traits and also by groups. If there is a page describing this fun

Re: [Freesurfer] about FreeSurfer QA tools errors

External Email - Use Caution Thanks, Andrew for replying. Best regards Xin On Thu, Aug 12, 2021 at 10:52 AM Hoopes, Andrew wrote: > Hi Xin, > > > > Are you using the QA tools from > https://secure-web.cisco.com/1M0BdrfUAFtsM7sCclEujxPoDhQ5T-YCM-ykHvPvQIzmG_tDuRSClxmvQRHcOLru6z4