[Freesurfer] Choosing projfrac/projdist and checking mri_vol2surf output

External Email - Use Caution Hi all, I have a question regarding checking the output of mri_vol2surf. I am converting a manually segmented volume ROI into a surface label in order to gain information such as cortical thickness. What is the best practice for quality control and c

[Freesurfer] Long_stats_slopes

External Email - Use Caution Hi, Is there any way to run long_stats_slopes on the aseg.stats file on the total thalamic structure instead of separately as right and left. Many thanks. AJ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harv

[Freesurfer] Recon-all running on a loop

External Email - Use Caution Dear FreeSurfer team, My name is Diana Ortega, I am a Neuroscience PhD student at Universidad Politécnica of Madrid. I run a job to compute recon-all in parallel for 30 subjects remotely on a supercomputer at my research institution. This job finished

[Freesurfer] Using control points for intensity normalization

Hi, I am trying to correct the white matter segmentation in the second image shown below. It doesn't include chunks of the temporal lobe with low intensity on both hemispheres. [cid:977433f0-d665-4dd2-b8a9-463c131c6d5f][cid:63b66545-8090-443e-a26d-be2b5e4c98f9] I placed many control points on ev

Re: [Freesurfer] Cerebellum Segementation

Hi Akila, Yes, the norm file should be in the mri folder of the recon output. To look at the ROI files you just need to load volumes in freeview or call it as freeview -v $volname from the command line. Lilla From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf

[Freesurfer] Question about mri_info

External Email - Use Caution Hello, Freesurfer exports My name is Wei Shao, I'm a beginner at Freesuefer and curious about the mri_info. I have searched the information through freesurfer online documents but there is not much I can find. I'm wondering are there any supplement doc

[Freesurfer] Job opportunity (ResearchAssistant/Lab Manager) at Boys Town National Research Hospital

External Email - Use Caution *Business:* Boys Town National Research Hospital *Job Summary:* As a Research Assistant/Lab Manager of the Center for Neurobehavioral Research (CNR), you join us in our work understanding the neurobiological bases of adolescent externalizing and inter