External Email - Use Caution
Good morning,
I am a Biomedical Engineering Student at Universitat de Barcelona and I am
creating a python script that has a Watchdog which detects new patients in
a specific folder, and we want it to run FS and Hippocampal Subfields. The
FS runs prope
External Email - Use Caution
Hello Experts!
This is the first time I am doing tractography and my aim is to do it
specifically for the cerebellum. I saw online that FreeSurfurer can segment the
cerebellum, to create the ROI but I’m not entirely sure how to go about this.
So far
External Email - Use Caution
Dear Greve,
thanks for your reply.
These are my steps (I corrected the second):
1) I open the inflated surface:
tksurferfv fsaverage lh inflated
(this successfully displays the inflated left hemisphere of the average subject)
2) I now load the over
External Email - Use Caution
Ok I found a solution using separately mri_fdr
thanks anyway!
Dr. Fabio Bernardoni
wiss. Mitarbeiter
Division of Psychological & Social Medicine and Developmental Neurosciences
http://secure-web.cisco.com/15vnpAEjrPYiKn6yEt0jIUfHx8_4Erx_TvQU05r-dRGFv
Hi Akila,
Have you run recon_all on your structural data?
Lilla
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of A.R. Sekar
Sent: Friday, May 14, 2021 10:35 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Cerebellum Segementation
External Email - Use Caution
Hey,
Thanks for your message. Yes I have!
Akila
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Zollei, Lilla,Ph.D.
Date: Friday, 14 May 2021 at 16:44
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Cerebellum Segementatio
Dear Joana,
Is it possibly that Python changes somehow that libraries that are loaded,
compared with the command line?
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
On May 14, 2021, at 06:06, Joana Collet i Fàbregas
mailt
External Email - Use Caution
Dear Juan Eugenio,
I'm not sure what you mean. In Python I use os.system() to run the
recon-all command from the command line.
Thanks!
Joana
El dv., 14 de maig 2021, 21:04, Iglesias Gonzalez, Juan E. <
jiglesiasgonza...@mgh.harvard.edu> va escriure:
External Email - Use Caution
Dear FreeSurfer team
I have been trying to run trac pre-processing on some subjects but keep getting
the error "xx: Subscript out of range."
The number of data entries in bvecs/bval files are similar to the .nii file and
I have used configuration fil
Yes, but that doesn’t guarantee that the (library) environment is the same as
when you run something from the terminal.
I’m CCing Andrew Hoppes to see if he can assist.
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
On May
10 matches
Mail list logo
