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Hi all,
I was wondering if anyone had a chance to look at the log to shed some
light on this mystery error, or if more info or a different log are needed.
Thank you,
Michele
On Fri, 12 Feb 2021 at 10:05, Michele Valotti
wrote:
> Hi Andrew,
> thank y
I don't know of an "elegant" way. You could convert the annotations to
labels (mri_annotatoin2label), the binarize the labels (mri_label2label
with --mask output), then AND them (fscalc bin1.mgz and bin2.mgz -o
and.mgz), then convert that back to a label (mri_cor2label, make sure to
use the --s
On 2/18/2021 7:06 AM, Jayachandra Raghava wrote:
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Hello Freesurfer Experts,
I am using Freesurfer version 7.1.1 to perform longitudinal
Samseg processing (using run_samseg_long) on my T1 longitudinal data.
1) First, I run the mri_robust_template to gene
On 2/18/2021 9:52 AM, Lisanne Michelle Jenkins wrote:
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Hi experts,
We want to combine two large datasets (of patients with different
diseases) that have been processed and manually edited using
Freesurfer 5.3 and Freesurfer 6.0.
From the Freesurfer web
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Dear all,
If you have earned a PhD degree in China in the last 3 years and would like
to do a Postdoc at Karolinska Institute in Sweden, please see the project
below:
*Dynamic Changes in Functional Brain Connectivity over the course of
Alzheimer’s Dis
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Hello freesurfer experts,
I would like to use freesurfer recon-all to obtain the regional cortical
thicknesses of subjects of ADNI dataset. I launched freesurfer recon-all and
obtained the parcellations according to Destrieux and Desikan-Killiany atl
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Dear all,
I am using glmfit to analyse changes in cortical thickness, but I
couldn't find a description on how to perform FDR correction with
FreeSurfer.
Is there a way to perform FDR correction of the statistical maps in
Freeview, analogous to how
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Hi Ruopeng,
Thank you, it works!
Cheers,
Dev
On Sun, Feb 21, 2021 at 3:01 PM Wang, Ruopeng
wrote:
> Hi Dev,
>
> I’ve checked in a fix for the issue. Meanwhile, for the 7.1.1 version that
> you’re running, there is a work around. If you load the pat
Dear Freesurfers,
In what file inside the patient_name/stats folder do I find the total white
matter volume?
In the file "aseg.stats" there is something called lh/rh "cortical white matter
volume", is that the right value to look at?
Thank you,
Valeria Barletta, MD
Massachusetts General Hospita
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Thnaks. Some of the data may have been copied from different places so I'm
concerned the time stamps might not be accurate which is why I'd prefer to run
from scratch using recon-all -s -i -hires -all
Nothing else is needed, correct? Only FS output
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Hi freesurfer experts:
I encountered a problem about freesurfer 7 with the T2pial flag.
when I use the freesurfer 6 — recon-all -all -i -s -T2 -T2pial, the
resulting T2.mgz is skull-stripped.
however, when I switch to the freesurfer 7, the resulting T2
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Hello Experts,
I've a question about mri_glmfit. I want to investigate the association
between thickness and neuropsychiatric syndromes, controlling for age and
cognition. Which model below is mri_glmfit performing?
Model 1
neuropsych syndromes ~ age
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Hello experts,
In response to the previous email about matlab installation error while
attempting to use hippocampal subfields.
I tried the following command as suggested by you :-
sudo apt-get install libcurses5-dev
But I get the following error :-
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Hi Ishi,
You apparently omitted an "n": it must be libncurses5-dev (please note the n
after lib).
And please try to keep previous correspondences intact,
as otherwise the devs must hunt the mail archive for the detail.
Best,
Horsng
> On Feb 23, 20
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