Re: [Freesurfer] Cannot find rh.white.H

External Email - Use Caution Hi Bruce, From recon-all.log: mris_curvature -w -seed 1234 rh.white.preaparc setting seed for random number generator to 1234 total integrated curvature = 21.097*4pi (265.116) --> -20 handles ICI = 150.9, FI = 1460.6, variation=23079.795 writing

[Freesurfer] Postdoctoral Fellowship in advanced multi-parametric imaging in Parkinson’s disease, Alzheimer’s disease, and healthy aging.

External Email - Use Caution My Lab, at Barrow Neurological Institute (Phoenix, AZ), is looking for a Postdoc. The study will be mainly focused on task-based fMRI and resting-state fMRI. *A postdoctoral fellowship position (fully funded for up to three years) is available at Ba

[Freesurfer] Parallel computing for recon-all

External Email - Use Caution Hi, Freesufer experts My name is wei shao, I have a few questions regarding the parallel computing of recon-all 1 According to documents, freesurfer is OpenMP code , I use -openmp 8 flag like: recon-all -alli -i input.file -s output.file -openmp 8 to

Re: [Freesurfer] Recon-all log

External Email - Use Caution Hello, no it wasn’t a T1. I am trying to process a super old data with a bad T1 (the contrast is not the best). I think the recon-all is failing in the skullstrip part. Do you have any advices on how to deal with this? I already tried changing the wa

[Freesurfer] LME Univariate Analysis

External Email - Use Caution Dear Freesurfer Experts, Hope this finds you well I am following the LME tutorial running LME Univariate analysis. I was wondering if someone would kindly check my steps below? I wanted to make sure specially that my matrix (X) and and contrast (C) w