When you run the thickness analysis with multiple comparisons correction
(mri_glmfit-sim), it will create "ocn" files. These will be clusters of the
significant areas. You can use this to extract other information. If you want
volume, then run mris_preproc using the --meas volume flag, the apply
Does it work on other subjects? I'm guessing this has to do with having the MNI
tools properly installed. For testing purposes, can you download and run
version 7 to see if it works?
On 12/8/2020 12:40 PM, Devanshi jain wrote:
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Hello FreeSurfer Developers,
Ths is a topological error that can be fixed with mris_fix_topology. But this
does not look human ...
On 12/8/2020 3:34 PM, Jie Zhao wrote:
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Hello Freesurfer Team
I have some questions about the inflated surface. As is shown in the attached
pictures, ther
On 7/11/2018 11:37 AM, John Anderson wrote:
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Dear Freesurfer experts,
I have two groups of subjects (healthy and patients). The patients have
different degrees of atrophy. Looking into the individual scans, the subjects
are largely different in the space be
This is explained in the PETsurfer documentation. Can you be more specified
about what that documentation does not cover?
On 12/9/2020 1:45 AM, 蒋袁芳 wrote:
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Thanks for the reply, and we are still curious about the files that the
Petsurfer out put. We want to
How did you change the orientation?
On 12/9/2020 4:16 AM, Nederpelt, D. van (David) wrote:
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If you're using v7XX, then you can use mris_place_surfaces. Look in the log
file for the command line.
On 12/9/2020 6:15 AM, Antonín Škoch wrote:
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Dear experts,
I have processed my data with -T2pial option. I would like now to also compute
thickness from wo
This might be the way it is given that the AAL is volume-based and you are
trying to put it on the surface. What is your vol2surf command?
On 12/10/2020 6:59 AM, Alberto Del Cerro Leon wrote:
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Hello Freesurfer team
With your help i obtained a AAL atlas on the
External Email - Use CautionHi,I’m not an expert but since your question hasn’t been answered yet I thought I’d share how I’d do that.But as I’m not an expert this might be a wrong way. Please verify the following first.For example to go from [0, 110] to [-1, 1] you’d need a convers
