[Freesurfer] Striatum Mask for Choi et al 2012

External Email - Use Caution Hi Freesurfer Experts: In $FREESURFER_HOME/average/Choi_JNeurophysiol12_MNI152 directory, there are a striatum parcellation masks based on functional connectivities to the cortical networks by Yeo et al 2011. I would like to register this striatum pa

Re: [Freesurfer] Freeview - hide coordinate labels in scripts for screenshots {Disarmed}

External Email - Use Caution Jocelyn, I need to hide them in a script, not by using the GUI. Chris. From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Mora, Jocelyn S. Sent: Saturday, 14 November 2020 1:37 AM To: Freesurfer support list Subject: Re: [Freesurfer] Freevi

Re: [Freesurfer] Freeview - hide coordinate labels in scripts for screenshots {Disarmed}

Hi Chris, There is no command-line option to hide them explicitly. But there is a workaround. You can change the options to hide them in the GUI and then close freeview. It will save the options as default. Then you can just run your script. Best, Ruopeng On Nov 15, 2020, at 5:16 PM, Chris Ad

[Freesurfer] use different parameters of MRI DICOM

External Email - Use Caution Hello Freesurfer Developers, I'm attempting to analyze data using freesurfer. The dataset we used includes two different series of MRI DICOM: The first series (n=562) was collected using the following paremeters: t1_fl3d (Voxel Size = 0.9×0.9×1.5mm

Re: [Freesurfer] Installing FreeSurfer on Windows 10 WSL Ubuntu System {Disarmed}

External Email - Use Caution Dear Admin, I am having trouble downloading FreeSurfer onto my Ubuntu WSL. I have tried downloading various .tar.gz files for CentOS 7 from the FreeSurfer directory (e.g. ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.1.0/

Re: [Freesurfer] Installing FreeSurfer on Windows 10 WSL Ubuntu System {Disarmed} {Disarmed}

External Email - Use Caution Hello Mathew, It reads like you have installed WSL on Windows 10 and have Ubuntu running as the guest OS in WSL.  Then from the Ubuntu guest OS you are trying to download a freesurfer distribution using the Freesurfer download links. Using the links o