Re: [Freesurfer] Freesurfer 7.1.0 on CentOS 8.1 {Disarmed}

2020-11-06 Thread Snedden, Ali
External Email - Use Caution Hello, Thank you for the response. I am working on a computer cluster where we install all user software on a shared filesystem. Looking at the RPM, it does not seem that I can install it in a path of my choosing (i.e. not in /usr). i.e. $ rpm -qp

Re: [Freesurfer] repeated measures ANOVA 2x2 two groups two times {Disarmed}

2020-11-06 Thread Douglas N. Greve
Oh, that's an error, you do not have to include --cache-in. Where is that page? On 11/5/2020 10:32 AM, Agurne Sampedro Calvete wrote: External Email - Use Caution Dear Douglas, Thank you very much for your rapid response. I have another question. I am following the FS Repeated Measu

Re: [Freesurfer] Fwd: using CAT12 segmentation for PVC {Disarmed}

2020-11-06 Thread Donatienne Van Weehaeghe
External Email - Use Caution Dear, Would there be another option to fix this? Kind regards Donatienne Op do 5 nov. 2020 om 17:38 schreef Donatienne Van Weehaeghe < donatiennevanweehae...@gmail.com>: > The subcortical structures were not delineated correctly, especially the > n

Re: [Freesurfer] mris_anatomical_stats error: stating file

2020-11-06 Thread Douglas N. Greve
which version of FS are you using? On 11/5/2020 11:29 AM, Chan, Shi Yu wrote: Hi, Yes, sorry! I copied the error message from terminal, but copied the command from my script so I copied the error message for the wrong hemisphere. I apologise for the confusion. I've attached the terminal out

Re: [Freesurfer] mris_anatomical_stats error: stating file

2020-11-06 Thread Chan, Shi Yu
Hi, I’ve tried this script in both freesurfer6.0.0 and freesurfer7.1.1, and get the same error message in both. My subjects were processed through recon-all with freesurfer 6.0.0. Thank you! From: on behalf of "Douglas N. Greve" Reply-To: Freesurfer support list Date: Friday, November 6, 2

Re: [Freesurfer] please help me {Disarmed}

2020-11-06 Thread Ammon, William
Hello, Are you still getting the error message that “atleast 1 subject must be provided”? Or is it a different error message? The screenshot shows you are in the directory MRI4 but the command you’ve sent indicates you want to output aparcstats.txt to the directory team33. Make sure to remove t

Re: [Freesurfer] repeated measures ANOVA 2x2 two groups two times {Disarmed}

2020-11-06 Thread Agurne Sampedro Calvete
External Email - Use Caution I found it here: https://secure-web.cisco.com/1Pobz-1CRgeaN25ufKu4UcOwbvjX2LjQiAacXtHLnJRq3FQhxMBarP9V62pvmTN-oTfoNLhHO4A5InMyZX-CjChowd6t4LnXQVq71s1pWtfaI0sRBlnMEein6reZM__dj0bhTOz-ln6_F607244YC4DVDD0Nco3HESUEIMLe4SvbfGSa-LaRnXl2QLem4nS4iHic8qO4tkACjlu

Re: [Freesurfer] Fixing error with pial surface {Disarmed}

2020-11-06 Thread Julie Ottoy
External Email - Use Caution Dear Bruce and Douglas, Thanks for the help, I have now uploaded the data. This is called subject_FS_upload.zip Please refer to the antsdn.brain.mgz (for T1) and the pial surface. As described below, the freesurfer output did not delineate some parts