[Freesurfer] Error in QDEC

2020-10-16 Thread Koustav Chatterjee
External Email - Use Caution Hello, I have found the following error while click on 'Generate Stats Data Tables' to import the aseg and aparc data from the FreeSurfer-processed group data, Could you please suggest how to overcome the issue? [image: image.png] Thank you, KC ___

[Freesurfer] Help!

2020-10-16 Thread Samar Fouda
External Email - Use Caution Hi! I am trying to run tracula- TRAC-All and I get this error message, i assumed it is because that bvals and bvecs needed to be predetermined but it seems like that is not the case and i am still getting the same error: Transform file should be eddy_c

[Freesurfer] PETSC ERROR WHEN TRYING TO OPEN FREEVIEW

2020-10-16 Thread Álvaro Deleglise
External Email - Use Caution Hi everybody, I've just installed FreeSurfer v6 in my ubuntu 20.04 SO, but I can't open freeview due to PETSC errors. I executed "freeview" in the console, and then the following messages appear: [0]PETSC ERROR:

Re: [Freesurfer] PETSC ERROR WHEN TRYING TO OPEN FREEVIEW

2020-10-16 Thread Wang, Ruopeng
Would it be possible for you to try the freeview build from FS v7: https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview Best, Ruopeng On Oct 16, 2020, at 2:47 PM, Álvaro Deleglise mailto:alvarodelegl...@gmail.com>> wrote: External Email - Use Caution Hi everybody, I've just insta

Re: [Freesurfer] Help!

2020-10-16 Thread Yendiki, Anastasia
Hi Samar - Can you please attach your trac-all.log file and your configuration file? It's hard to guess what's going on just from the line where the error occurs without seeing everything that came before it. Thanks! Anastasia. From: freesurfer-boun...@nmr.mgh.ha

Re: [Freesurfer] Help!

2020-10-16 Thread Samar Fouda
External Email - Use Caution Hi Anastasia, Thank you so much for responding, please find the log attached! On Fri, Oct 16, 2020 at 3:24 PM Yendiki, Anastasia wrote: > Hi Samar - Can you please attach your trac-all.log file and your > configuration file? It's hard to guess what'

Re: [Freesurfer] Help!

2020-10-16 Thread Yendiki, Anastasia
What version of FSL are you using? It seems to be an incompatibility between the version of FSL and version of python that you have: https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=fsl;73e3d6df.1604 From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Samar F