Re: [Freesurfer] -T2pial after white matter edits

2020-05-16 Thread Octavian Lie
External Email - Use Caution Dear Doug Just to be clear I ran the 1st process on subject x with recon-all -s x -T2 volT2.nii -T2pial It still needed wm edits. On rerun, can I just do recon-all -s x autorecon2-wm -autorecon3 or I need to reuse the T2 for best results recon-

Re: [Freesurfer] Group Analysis Covariates

2020-05-16 Thread Hua, Jessica
External Email - Use Caution Sure, attached is the FSGD file. In case helpful, I have also attached the Xg.dat file. --- Jessica Hua, M.A. Cognitive and Emotional Control Lab Doctoral Candidate Clinical Psychology University of Missouri GroupComparison_AllMRI.AgeSexICV.fsgd De

[Freesurfer] Recon-all error in CA Normalize (FreeSurfer V 7.1)

2020-05-16 Thread Schranzer René
External Email - Use Caution Dear Freesurfer experts, I'm trying to recon-all (-hires) for a new subject (mp2rage image) using the FreeSurfer Version 7.1. However, the recon-all exited with errors at the "mri_ca_normalize". I also processed the same subject from different timepo

Re: [Freesurfer] Group Analysis Covariates

2020-05-16 Thread Douglas N. Greve
Sorry, can you include previous correspondence so that I have context? On 5/16/2020 1:55 PM, Hua, Jessica wrote: External Email - Use Caution Sure, attached is the FSGD file. In case helpful, I have also attached the Xg.dat file. --- Jessica Hua, M.A. Cognitive and Emotional Contro