[Freesurfer] Email info for free surfer mailing list

2020-01-15 Thread ezgi arikan
External Email - Use Caution Best Regards Ezgi Arikan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Oval shape in average subject inflated

2020-01-15 Thread Marina Fernández
External Email - Use Caution Is there something wrong? > Dear Freesurfer team, > > I created the FS average subject of the same dataset with 5th and 6th order icosahedron tesselation using the following commands: > make_average_subject --fsgd fsgd.txt --ico 5 --out avg_subject

Re: [Freesurfer] Oval shape in average subject inflated

2020-01-15 Thread Bruce Fischl
Hi Marina for the lower res fsaverage subjects you probably want to decrease the number of iterations of the inflation. For fsaverage6 you could try: mris_inflate -n 5 lh.smoothwm lh.inflated.new it should be just a min or two so you can try different values for the -n switch cheers Bruce

[Freesurfer] Lab for Computational Neuroimaging is hiring new Research Techs

2020-01-15 Thread Morgan, Leah
Hi everyone, The Lab for Computational Neuroimaging is hiring new Research Assistants. The job description is included below, with instructions on how to apply through MGH. Please feel free to forward on to anyone who may be interested. Computational Neuroimaging Lab seeks Research Assistant/Te

Re: [Freesurfer] Retinotopy, design ill-conditioned

2020-01-15 Thread Marco Ninghetto
External Email - Use Caution Sorry for the late reply, the message was non stop bounced. So, here You will find: - terminal output for `selxavg3-sess` (filename: terminal_output.txt). I copied only the last part when freesurfer accesses to MATLAB and where the error occurs; - the

[Freesurfer] Qdec and TkSurfer input boxes

2020-01-15 Thread Marcos Martins da Silva
External Email - Use Caution Hi! I use FreeSurfer 6.0 over CentOS 7. I have just notice a problem with input/entry/edit boxes in Qdec and TkSurfer. I can see box content, click inside the box and even select the content but it seems read only: I can't change it. So it is impossible

[Freesurfer] FreeSurfer analyses in MatLab

2020-01-15 Thread Graduate Imaging
External Email - Use Caution Hello, I recently ran a vertex wise analysis on two different projects the first had three groups with three co-variates that looked at if group membership was associated with brain volume. The second project had two groups with three co-variates looki