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I think a part of the problem is from this part in load_mgh.m:
% unzip if it is compressed
if (strcmpi(fname((strlen(fname)-3):strlen(fname)), '.MGZ') | ...
strcmpi(fname((strlen(fname)-3):strlen(fname)), '.GZ'))
rand('state', sum(100*clock));
gzip
You can unzip it outside of freesurfer and name it *.mgh then see if it works
cheers
Bruce
> On Dec 30, 2019, at 3:49 AM, mahdi mahdavi wrote:
>
>
> External Email - Use Caution
>
> I think a part of the problem is from this part in load_mgh.m:
>
> % unzip if it is compressed
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Dear experts,
a freeview command-line label sub-option "opacity" does not work for me.
Freeview exits with error: Unrecognized sub-option flag 'opacity'.
I am using most recent dev version (30 dec 2019).
Could you please check that?
Regards,
Can you post the full command?
Ruopeng
> On Dec 30, 2019, at 1:10 PM, Antonin Skoch wrote:
>
>
> External Email - Use Caution
>
> Dear experts,
>
> a freeview command-line label sub-option "opacity" does not work for me.
>
> Freeview exits with error: Unrecognized sub-opti
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Hi Ruopeng,
the command is something like:
freeview -f rh.inflated:label=my.label:opacity=0.5
I see now, that the reason of my problem is that the "opacity" flag is
dedicated for volume labels (loaded by -l flag), not surface labels (loaded by
Dear Freesurfer experts,
I am a medical student and am currently doing a fellowship at the JPK Stroke
Research Center - MGH. My current research project involves measuring the area
of a cortical hypointense brain MRI signal (cortical superficial siderosis) , a
marker that lays along the subarac
I’ll add the option for surface labels.
> On Dec 30, 2019, at 2:02 PM, Antonin Skoch wrote:
>
>
> External Email - Use Caution
>
> Hi Ruopeng,
>
> the command is something like:
>
> freeview -f rh.inflated:label=my.label:opacity=0.5
>
> I see now, that the reason of my pro
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Hi list,
where/how should I add the file listed below?
https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/vol2subfield
Thanks___
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Freesurfer@nmr.mgh.harvard.edu
https:
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Dear FS experts,
I’m processing the task-related fMRI using FS-FAST. I check the quality assurance and modified some subjects’ registration file(named new one as “register_manual.lta”). Then I do the first level analysis and gr
