Re: [Freesurfer] Running FSL randomise on FS cortical thickness data

FreeSurfer has its own permutation software https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm We also have a handy interface to palm https://surfer.nmr.mgh.harvard.edu/fswiki/FsPalm On 7/27/2019 9:33 PM, Mark Wagshul wrote: External Email - Use Caution Grea

Re: [Freesurfer] Running FSL randomise on FS cortical thickness data {Disarmed}

External Email - Use Caution Doug, Thanks. Unfortunately, this is only for the GLM, is there an equivalent version for the linear mixed model? I haven’t seen one. I guess we could figure out how to integrate lme into mri_glmsim, but I’m not sure that’s a better use of our tim

[Freesurfer] WM surface including too much gray matter

External Email - Use Caution To whom it may concern: I'm dealing with an issue in my subjects' recon-all output where the white matter surface extends into the gray matter, especially in the parietal and posterior temporal regions. This is caused by the wm.mgz including too