Re: [Freesurfer] Problem with lme_mass_fit_vw

2019-06-12 Thread Diers, Kersten /DZNE
External Email - Use Caution Yes, that seems fine to me. Kersten Am 10.06.2019 um 00:59 schrieb Hua, Jessica mailto:jph...@mail.missouri.edu>>: External Email - Use Caution Dear Kersten, Thank you so much for your help! I made a duplicate copy of the matlab director

Re: [Freesurfer] running recon -all and trac -all from different FreeSurfer home

2019-06-12 Thread Costanza Gianni'
External Email - Use Caution Dear Anastasia, I moved to Fressurfer v6.0.0 and I prepared the config file for trac -all. Since I'm running it locally I changed bedpostx_mgh to bedpostx in trac -all accordingly to previous answers found in the archives. This is the error message I

Re: [Freesurfer] hippocampal subfield as CONN seeds

2019-06-12 Thread Nelson, Eric A
External Email - Use Caution Im not sure I understand the question because I have not successfully registered the hippoSfLabels file to mni space. I can load the hippoSfLabels.mgz file into CONN at the subject level, but I have two problems. 1st it is not in MNI space. 2nd it is

Re: [Freesurfer] multi-slice timing correction

2019-06-12 Thread Greve, Douglas N.,Ph.D.
Sorry for the slow response (at OHBM). Yes, that sounds correct. If you pass it a file, then all other options are ignored. On 6/12/2019 7:12 AM, Joseph Dien wrote: External Email - Use Caution Okay, I looked through the source code itself and I think I worked it out. preproc-sess call

[Freesurfer] Tksurfer and qdec: error sourcing and floating exception

2019-06-12 Thread Wafaa Sweidan
External Email - Use Caution Hello all, I have been using freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c on macos high sierra, then I updated to mojave 10.14. freeusrfer was working all good for a while. BUT, for unknown reasons, I am no longer able to overlay the significance

Re: [Freesurfer] Tksurfer and qdec: error sourcing and floating exception

2019-06-12 Thread fsbuild
External Email - Use Caution Hello Wafaa, I believe qdec runs as a 32 bit application.  You may see Mac OS 10.14 put up a window warning that an application is not optimized for the system and needs to be re-compiled by its developer; that means it is a 32 bit app.  While ma