Re: [Freesurfer] Labelling SurfStat p-value surface map

2019-05-27 Thread Tim Schäfer
External Email - Use Caution Hi Loïc, that does not look correct, the data is definitely off. I'm not sure where the variables `mean_rest` and `surf.b` come from in your code, and I suspect that something is wrong with them. In the meantime, I got interested in this myself and

Re: [Freesurfer] Labelling SurfStat p-value surface map

2019-05-27 Thread Loïc Daumail
External Email - Use Caution Hi Tim, 'mean_rest' is a diffusion embedding map, which contains scores for every vertex on fsaverage5 surface resolution. 'surf.b' is the pial surface of both hemispheres of fsaverage5... I also tried forjust lh hemisphere, but it gives me the same re

Re: [Freesurfer] Labelling SurfStat p-value surface map

2019-05-27 Thread Loïc Daumail
External Email - Use Caution Hi Tim, Your link works perfectly, it's awesome! Thanks a lot, Best, Loïc Le lun. 27 mai 2019 à 11:43, Loïc Daumail a écrit : > Hi Tim, > > 'mean_rest' is a diffusion embedding map, which contains scores for every > vertex on fsaverage5 surface re

[Freesurfer] Some questions about mris_make_template and downsample

2019-05-27 Thread Jingyue Zhang
External Email - Use Caution Dear Freesurfer experts: Hello! I'm a new student to surface based fMRI analysis. Now I'm dealing with a functional parcellation problem. The subjects in my dataset has different vertex number and I need to do a group level parcellation, so I de