Re: [Freesurfer] myelination and freesurfer segmentation...

Hi Gonzalo I don't really understand what you are asking. Can you give us more details? cheers Bruce On Fri, 2 Nov 2018, Gonzalo Rojas Costa wrote: External Email - Use Caution Hi: Could you please tell me if Is there is a paper on myelination and segmentation? Sincerely, Gonza

[Freesurfer] Freeview xcb error

External Email - Use Caution Hi Freesurfer experts, I'm using redhat 7 so I installed the development centos7 version of freesurfer: *https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/ * I followed the install

Re: [Freesurfer] Lacunes

Hi Emily it's going to be tough to get it past the gray matter lesions. If you have labels we could implement something to fill them in with surrounding tissue intensities I suppose, but we don't have anything at the moment sorry Bruce On Wed, 31 Oct 2018, Emily Schwartz wrote: E

Re: [Freesurfer] Freeview xcb error

Hi Emily, we’re working on this now and a fix will be released within the next couple days. best, Andrew From: on behalf of Emily Levin Reply-To: FS Help Date: Friday, November 2, 2018 at 11:49 AM To: FS Help Cc: Maximilian King Subject: [Freesurfer] Freeview xcb error External

Re: [Freesurfer] automating custom color map

External Email - Use Caution Thank you so much, Ruopeng. Do you have an estimated timeline for when this option might be done? Ryan From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Ruopeng Wang Sent: Thursday, November 1, 2018 7:18:

Re: [Freesurfer] Export stats

Hi Miguel, unfortunately asegstats2table can only create one file at a time for each measure. Andrew From: on behalf of Miguel Ángel Rivas Fernández Reply-To: FS Help Date: Thursday, November 1, 2018 at 11:17 AM To: FS Help Subject: Re: [Freesurfer] Export stats External Email - U

Re: [Freesurfer] Lacunes

External Email - Use Caution Dear Emily, similar errors I usually try to correct by editing wm.mgz (fill the spots by intensity 255). But it does not work always (mainly when the hypointensities are of large extent, it often does not help either). Antonin Hi Emily it's going

Re: [Freesurfer] automating custom color map

It should be available tomorrow. You can download it from here *tomorrow*: https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview The option is 'overlay_custom'. It can be applied like this: freeview -f lh.orig:overlay=overlay_file:overlay_custom=val1,r1,g1,b1,val2,r2,g2,b2,... val is the

Re: [Freesurfer] myelination and freesurfer segmentation...

External Email - Use Caution Hi Bruce, Perhaps he wants to know about whether changes in myelination will affect things like estimates of cortical thickness? Matt. On 11/2/18, 10:11 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Bruce Fischl" wrote: >Hi Gonzalo > >I

Re: [Freesurfer] Third party dependencies directory not found when building from source

External Email - Use Caution Thank you to all who are providing input for these issues. After ensuring the correct versions of gcc, g++, and gfortran were installed and being used, I am able to complete the `make` command. However, when I conduct `make test`, I receive the follo