Re: [Freesurfer] freesurfer selxavg3-sess error

2018-10-28 Thread Francesca Strappini
External Email - Use Caution Thanks! Now it's loading correctly my event file. However, when I run selxavg3-sess I get this error message: selxavg3-sess -a FF-MonkeyCassis.sm03.lh -s MonkeyCassis-FF -no-con-ok outanadir = /usr/local/freesurfer/fsfast/Monkeys/MonkeyCassis-FF/bold/

Re: [Freesurfer] cluster failing on HCP freesurfer script

2018-10-28 Thread fsbuild
External Email - Use Caution ​Mac OS comes with perl 5.18.  The module MNI/Startup.pm is not part of standard perl, and so it is provided in the freesurfer distribution.  When you source either the FreeSurferEnv.csh or FreeSurferEnv.sh script the environment variable MNI_PERL5LI

Re: [Freesurfer] Segmentation fault

2018-10-28 Thread fsbuild
External Email - Use Caution Hello Jon, Can you get any stack or backtrace information after the segfault occurs ?, e.g., Mac OS has the option to display the crash report with a trace.  On Linux you could run thru gdb and get a back trace.   This would help us to see where the