Re: [Freesurfer] denoising and recon-all {Disarmed}

2018-10-12 Thread Falk Lüsebrink
External Email - Use Caution Dear Lisa, what you potentially can do is to use the denoised surface (*h.white) as a starting point (instead of *h.orig) in the unfiltered stream. This should remove any bias introduced by the denoising, however, you should gain the advantages of d

Re: [Freesurfer] denoising and recon-all {Disarmed}

2018-10-12 Thread Miguel Ángel Rivas Fernández
External Email - Use Caution Dear Falk, I tried to search your poster presentation in the 2018 ISMRM web but unfortunately I did not find it. Can you attach the link? I would be interested in this information and how to proceed. Thanks in advance, Best, El vie., 12 oct. 2018 a

Re: [Freesurfer] denoising and recon-all {Disarmed}

2018-10-12 Thread Falk Lüsebrink
External Email - Use Caution Dear Miguel, sorry that I forgot to attach the link to the abstract. You can find it here: http://archive.ismrm.org/2018/2834.html Best, Falk Von: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag vo

Re: [Freesurfer] mri_watershed Error

2018-10-12 Thread Boris Rauchmann
External Email - Use Caution It would be great if you can have a look at the nu.mgz and talairach.xmf but unfortunately I´m not able to provide it in the mailing list. Is there another way to send you the files? Thanks, Boris > Am 11.10.2018 um 22:04 schrieb Bruce Fischl : > >

Re: [Freesurfer] Correction Needed for the Midline

2018-10-12 Thread Maxime Perron
External Email - Use Caution Hi Bram,  Thank you very much for the reply, I'm glad you'll have some time to look at the issue. Please don't hesitate to contact me should anything specific be needed. I'll be happy to contribute! Many thanks, Maxime​ ​ De : freesur

Re: [Freesurfer] create label from cluster obtained with mri_glm-fit-sim

2018-10-12 Thread Greve, Douglas N.,Ph.D.
yes, that is fine On 10/11/18 11:21 PM, Ting Li wrote: External Email - Use Caution Dear Dr. Douglas, Thank you so much for your response. With your instruction, it works. This is how I did. First, copy the significant cluster annot file from the simulation fold to one of subject lab

Re: [Freesurfer] FreeSurfer Errors

2018-10-12 Thread Greve, Douglas N.,Ph.D.
On 10/11/18 1:58 PM, Sparsh Jain wrote: External Email - Use Caution Hey! I have recently started using FreeSurfer. I have encountered multiple errors over the past few days, and I would like to mention them all. 1. While testing the installation, the code ran for roughly 4-6 hours a

[Freesurfer] using mris_ca_train

2018-10-12 Thread Maedeh Khalilian
External Email - Use Caution Dear Freesurfer experts, I have a question, does the number of input subjects matter in using "mris_ca_train" or not? i mean does it affect the results?(maybe the more subjects, the better result) and if yes, what is an approximate number? and the sec