Re: [Freesurfer] Blood vessels FreeSurfer

2018-09-23 Thread Bruce Fischl
not at the moment, sorry Bruce On Sun, 23 Sep 2018, Žaneta Železnikova wrote: External Email - Use Caution Hello, I couldn't find a clear answer online but it's possible to visualize only blood vessels of the brain?  Thank you  __

Re: [Freesurfer] mri_glmfit-sim error

2018-09-23 Thread Greve, Douglas N.,Ph.D.
Can you verify that the followign file exists, that you have read permission, and that you can successfully load it into freeview? /lustre/group/p00355/REST_Beijing_SCZ/Freesurfer/fsaverage/surf/rh.white On 9/21/18 11:41 AM, C.P.E. Rollins wrote: External Email - Use Caution Hello Freesur

Re: [Freesurfer] GLM

2018-09-23 Thread Greve, Douglas N.,Ph.D.
you need to have four classes, young-female, young-male, old-female, old-male On 9/21/18 3:15 AM, 郑凤莲 wrote: External Email - Use Caution Dear experts, I am using FS 6.0 for some studies. I want to calculate the thickness difference between males and females in two group, Young group a

Re: [Freesurfer] make_average_subject error

2018-09-23 Thread Greve, Douglas N.,Ph.D.
Can you send the make_average-subject command and log file? On 9/21/18 7:03 AM, C.P.E. Rollins wrote: External Email - Use Caution Hello Freesurfer Developpers, I'm attempting to make a study specific template using all of my subjects as input using the make_average_subject command, but a

Re: [Freesurfer] calculated cortical thickness from segmented binary gray matter and white matter images from other software

2018-09-23 Thread Greve, Douglas N.,Ph.D.
Not by default with our software. You could create white and pial surfaces, but they would not be very accurate, and there would be no way to fit the surfaces to the segmentations. On 9/21/18 10:21 AM, yuanchao.zha...@gmail.com wrote: External Email -

[Freesurfer] Visualization fo brain vessels

2018-09-23 Thread Patrik Krumpolec
External Email - Use Caution Good morning! I want to ask if it is possible to visualize compartment of brain vessels in freesurfer through freeview. Thank You very much and have a nice day! patrik krumpolec ___ Freesurfer mailing list Fr