Re: [Freesurfer] periaqueductal gray

2018-07-22 Thread Bruce Fischl
no, not yet, although it is high on our list cheers Bruce On Sun, 22 Jul 2018, Mr. Tass wrote: External Email - Use Caution Hi, Just wondering if the periaqueductal gray is part of the automatic segmentation process and if we ca n obtain the volume. I checked the aseg tabl

Re: [Freesurfer] Skull as an Object

2018-07-22 Thread Zhang, Alexander D
Hi Bruce, Thanks so much! Noam will be helping me out with this but if we run into anything I'd love to talk with Matti. Best, - Alex On 7/21/18, 1:46 PM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Bruce Fischl" wrote: Hi Alex I'm not entirely sure what you mean. We d

Re: [Freesurfer] Yeo-2011 individual ROIs

2018-07-22 Thread Thomas Yeo
External Email - Use Caution Hi Ehsan, Not sure if any is exactly what you need: 1) We have divided the 7 and 17 networks into 51/114 ROIs ( https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Yeo2011_fcMRI_clustering). Note that these are group-le

Re: [Freesurfer] Skull as an Object

2018-07-22 Thread Bruce Fischl
Of course Bruce > On Jul 22, 2018, at 6:42 PM, Zhang, Alexander D wrote: > > Hi Bruce, > > Thanks so much! Noam will be helping me out with this but if we run into > anything I'd love to talk with Matti. > > Best, > - Alex > > On 7/21/18, 1:46 PM, "freesurfer-boun...@nmr.mgh.harvard.edu on

[Freesurfer] (no subject)

2018-07-22 Thread Maedeh Khalilian
External Email - Use Caution Dear FreeSurfer experts, I would like to use the FreeSurfer package to do a parcellation.Just for testing, I am using "buckner_data" and there is a step I have been stuck in.I have problem using "mris_ca_train" command.This is the whole code I run

[Freesurfer] The Problem Using "mris_ca_train"

2018-07-22 Thread Maedeh Khalilian
External Email - Use Caution Dear FreeSurfer experts, I would like to use the FreeSurfer package to do a parcellation.Just for testing, I am using "buckner_data" and there is a step I have been stuck in.I have problem using "mris_ca_train" command.This is the whole code I run