Re: [Freesurfer] Problems Extending the Pial Surface

2018-05-01 Thread Miguel Ángel Rivas Fernández
External Email - Use Caution Hi Bruce, The problem is that the reconstruction of the pial surface is incorrect. I tried to put control points on some voxels but did a wrong reconstruction because in this region there is no voxel with an intensity between 95-110. How can I improve

Re: [Freesurfer] Problems Extending the Pial Surface

2018-05-01 Thread Bruce Fischl
why don't you tar and gzip the whole subject dir and upload it to our ftp site and we will take a look cheers Bruce On Tue, 1 May 2018, Miguel Ángel Rivas Fernández wrote: External Email - Use Caution Hi Bruce, The problem is that the reconstruction of the pial surface is

[Freesurfer] question about hippocampal vols

2018-05-01 Thread Anik Dar
External Email - Use Caution Hi All, I have run quantifyHAsubregions.sh hippoSf - and have the volumes for the hippocampal subfields. From which of the following segmentation files are these volumes computed from ? lh.hippoAmygLabels-T1.v21.CA.FSvoxelSpace.mgz lh.hippoAmygLab

Re: [Freesurfer] question about hippocampal vols

2018-05-01 Thread Iglesias Gonzalez, Eugenio
External Email - Use Caution Dear Ani, What was the exact command you used? Cheers, /Eugenio -- Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ From: on behalf of Anik

[Freesurfer] Call for PRIME-MICCAI 2018 papers **1st International Workshop on PRedictive Intelligence in MEdicine **

2018-05-01 Thread Islem Rekik
External Email - Use Caution Dear all, We present the 1st edition of the *PR*edictive *I*ntelligence in *ME*dicine (*PRIME*) workshop in conjunction with *MICCAI 2018* in Granada, Spain. The main aim of PRIME is to propel the advent of predictive models in a broad sense, with appl

Re: [Freesurfer] question about hippocampal vols

2018-05-01 Thread Anik Dar
External Email - Use Caution Hi Eugenio, Its - quantifyHAsubregions.sh hippoSf T1 Hipocampal-subfields.txt ./ Thanks Ani On Tue, May 1, 2018 at 11:04 AM, Iglesias Gonzalez, Eugenio < e.igles...@ucl.ac.uk> wrote: > External Email - Use Caution > > Dear Ani, > > What wa

Re: [Freesurfer] question about hippocampal vols

2018-05-01 Thread Iglesias Gonzalez, Eugenio
External Email - Use Caution Thanks, Ani. Apologies for not having understood your question right away. Essentially, the volumes are computed from a probabilistic segmentation at the finest subfield level, which is used to generate all the discrete segmentations you listed below.