Hello,
please find my responses below.
Best regards,
Kersten
On Do, 2018-03-29 at 00:11 +0200, Kaushal, Mayank wrote:
Hi Kersten,
Apologies for the delay. I am still in the process of trying to figure out the
gaps in my understanding and would appreciate your inputs.
I created the design X
not sure what you are trying to do. can you send a picture? the default
lag is TR/2
On 3/29/18 2:30 PM, Sarah Cole wrote:
Thanks, Doug.
I added (-4s) delay and plotted the data but I got the same delay as
no shift. Also I did (+4) delay and lost most of the activation.
Do you have any reco
It looks like brainmask.mgz might have been corrupted. Can you run
mri_info on it? Does its size look about right? Can you create
brainmask.mgz again?
On 3/29/18 4:06 PM, Anna Daniels wrote:
Dear FreeSurfer team,
after editing the brainmask.mgz (manually or with gcut),
brain.finalsurfs.mane
Hi Doug,
Sure. I have attached an excel sheet.
I have averaged the signal magnitude across 16 blocks of objects, and 16
blocks of scenes, separately. Each block has 8 TRs (TR=2).
The top plot is the data with the default -TR/2 delay.
The bottom plot is the data with -2TR delay.
In both plots, we
Dear experts,
while running recon-all on FreeSurfer 5.1.0 I encountered the following error:
mri_watershed Error: indices out of bounds
I searched the email archive and found this thread:
https://www.mail-archive.com/search?l=freesurfer@nmr.mgh.harvard.edu&q=subject:%22\[Freesurfer\]+mri_watershed
Hi all,
Sorry in advance, this is a bit of an annoying one!
I am trying to use freesurfer's automatically generated MT label as a parcel to
constrain activity measured during a functional MT localizer. I am currently
doing my analysis in the volume and I'd like to transform the MT surface label
On the vcAtlas website, it says "The cytoarchitectonic atlas is
available on the FreeSurfer average surface (fsaverage). Thus your data
need to be aligned to the fsaverage brain." so I assumed the input label
is in fsaverage space. Only labels and annot files are available from
the vcAtlas -- so I
