Dear Freesurfer Experts,
I would like to display my results after running the LGI command on my subjects
(via Freesurfer 6.0, MacOS Sierra). Although I created the .Qdecrc (text file)
file with MEASURE1 = pial_lgi and put it in my home directory as well as in the
folder where my study subjects
Hi,
I am attempting to use the longitudinal pipeline of the "hippocampal subfields
and nuclei of amygdala”, but keep getting a flawed output.
My dataset consists of images from a longitudinal study with some dropouts.
First, I ran the reconall longitudinal pipeline in fs60 for all subjects. I g
Hi Aura,
1. What do you mean by “loading Matlab 8.2”? It should be Matlab 8.4 (2014b).
2. “Some still did”: what error did you get?
- Also, I’m confused by what you wrote, that subfields worked but hippocampal
module didn’t (aren’t they the same thing?)
- Finally: can you please send us a screen
Before I try that I will try increasing the intensity of the shaded voxels.
I already tried running nu_correct, and does improve a little bit. The
shading is a gradient (from darken into brighter, I will see if I can find
the gradient in the out of brain pixels (like the dark areas of the image)
an
