Re: [Freesurfer] PET processing seg fault with mri_glmfit --mrtm1

Dear Douglas, I run another participant with PET Surfer. This time I converted the original PET image from .hdr/.img to nii.gz using mri_convert. I had the same problem when I run MRTM1. Please, find attached the log from the beginning. Thank you and kind regards, CP On Mon, Nov 13, 2017 at 9:3

[Freesurfer] PostDoctoral Position to Study Multimodal Connectomics of Neuromodulation at MGH (Boston, MA)

POST-DOCTORAL RESEARCH FELLOW LABORATORY FOR NEUROPSYCHIATRY AND NEUROMODULATION MASSACHUSETTS GENERAL HOSPITAL, HARVARD MEDICAL SCHOOL Background: The Laboratory for Neuropsychiatry and Neuromodulation (Camprodon Lab) in the Division of Neuropsychiatry at Massachusetts General Hospital (Harvard

Re: [Freesurfer] Changing operating system.

Thank you very much for your suggestions RB On Saturday, November 11, 2017, Bruce Fischl wrote: > some of this is dependent on things out of our control (e.g. third party > libraries and such). Certainly rerunning is the safest thing to do, but if > that is too much of a burden you could rerun a

[Freesurfer] Freeview display issue in Ubuntu 14/16 VM

Hi Freesurfer folks, I’ve recently started using an Ubuntu virtual machine on PC host, and have noticed a problem in both Ubuntu 14 and 16 (but not 12) with Freeview. When a freeview window is opened, the black screen for displaying volumes/surfaces is necessarily at the front of the screen (i.e.,

Re: [Freesurfer] Freeview display issue in Ubuntu 14/16 VM

Have you installed the latest graphics driver for the virtual machine? Is there any 3D/OpenGL settings you can play with for the virtual machine? Best, Ruopeng On 11/14/2017 11:44 AM, Nicholas Blauch wrote: Hi Freesurfer folks, I’ve recently started using an Ubuntu virtual machine on PC host,

[Freesurfer] Simultaneously morphing to CVS + Downsampling.

Dear FreeSurfer community, I have applied mri_cvs_register to subjects' T1 scans using FreeSurfer 6.0 and mri_vol2vol to warp fractional anisotropy spatial maps warped to CVS space. A previous post talks about functionality of "morph + downsampling" in a single step coming in the future: htt

[Freesurfer] feeding data not processed with longitudinal pipeline into Linear Mixed Effects (LME) model

Hello Freesurfer experts, I have two longitudinal datasets. In each dataset, some participants have only a single timepoint. For this reason, I aim to run the Linear Mixed Effects (LME) Model described at https://surfer.nmr.mgh.harvard.edu/fswiki/LinearMixedEffectsModels. I understand that it

Re: [Freesurfer] Freeview Crashes!!

What is the output of: ldd `which freeview.bin` thanks, Andrew On Nov 10, 2017, at 8:52 AM, Ruopeng Wang mailto:rpw...@nmr.mgh.harvard.edu>> wrote: What version of freesurfer did you run? It looks like the issue is related to incompatible/missing libraries. Ruopeng On Nov 10, 2017, at 7:18 A

Re: [Freesurfer] Getting aparc.a2009s.annot in MNI

Hi all, I am still struggling with my previous question I processed a bunch of subjects using recon-all, but now I would like to get labels from aparc.a2009s.annot from each subject in MNI space in nii from. How can I obtain the Destrieux labels in nii format in MNI (2mm) How can I do this? Than