Re: [Freesurfer] mask volume calculation

Hi Ehsan we do partial volume estimation for all border voxels in a label (like your mask). Look at the help in mri_segstats and you should be able to sort it out cheers Bruce On Wed, 1 Nov 2017, Ehsan Tadayon wrote: [490353fad4dbc1e2d4df113f9e07e0fb7d507be0.png?u=375924] Hello FS experts

Re: [Freesurfer] Occipital flattening

Hi Patricia can you send the command line and output as text so we can for example search it? thanks Bruce On Wed, 1 Nov 2017, Patricia Stefancin wrote: > Here is the command line and output > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.

[Freesurfer] VBM question

Dear Freesurfer users, I would like to study the between groups changes of volume/cortical thickness of one region (Perirhinal) belonging to the Brodmann areas. I tried to do that with Qdec tool but unfortunately Qdec does not load the Brodmann areas stat list. I am wondering if I could use the

[Freesurfer] Question about Xhemi

Dear Freesurfer experts, When I try run mris_apply_reg according to Xhemi: "the error is lh.map.mgh does not exist or is not readable by you" lh.map.mgh is made by which step? Thank you in advance. best, Lanbo ___ Freesurfer mailing list Freesurfer@nmr