[Freesurfer] PhD position in collaborative predictive analytics (Munich)

An immediate full-time PhD position is available for an outstanding researcher in the Section for Neurodiagnostic Applications at the Dep. of Psychiatry and Psychotherapy, LMU Munich, directed by Prof. Nikolaos Koutsouleris. The position involves the development of cloud-based predictive applic

[Freesurfer] Centos 7 - freesurfer hippocampal subfield visualization

Dear freesurfer experts, after an update of my computer I finally use Centos 7 now. It seems as if some parts of the lateral hippocampal subfield segmentation are not visualized any more when using freesurfer. When using FSL, everything looks fine, though. Do you have any suggestions, what to do

[Freesurfer] PETSURFER - mri_gtmpvc option to use SGTM

Hi Team, Could you please tell me how to modify this command to perform SGTM mri_gtmpvc --i pet.nii.gz --reg template.reg.lta --psf FWHM --seg gtmseg.mgz --default-seg-merge --auto-mask PSF .01 --mgx .01 --o gtmpvc.output I have tried with -sg

[Freesurfer] Recommended MRI acquisition protocol for Siemens 3.0T Prisma

Hi Freesurfer team, Do you have any recommended MRI protocols for the Siemens 3.0 Prisma? I am analyzing both morphometry and function with ASD subjects. Thank you for your help, Karla

[Freesurfer] Fwd: recon-all error: ERROR! FOV=272.000 > 256

Hi FS team, I encountered recon-all error and I want to solve the problem or find alternative method. As you can see forwarded mail thread, I asked about the problem before but i couldn’t any clear answer.. Would you suggest someone to advice me how to deal with the problem? Thanks, Juhyoung

Re: [Freesurfer] PETSURFER - mri_gtmpvc option to use SGTM

mri_gtmpvc always uses the SGTM. When I programmed it, I did not understand the difference between the SGTM and the GTM, so I just called everything "GTM" On 8/28/17 3:03 PM, M Janani wrote: Hi Team, Could you please tell me how to modify this command to perform SGTM mri_