Hello Team,
I have run "recon-all -i subject.nii -s subject -all -notalairach" command, i
wanted to run it with notalairach. I am getting the following error:
"No such file or directory
mris_anatomical_stats: could not open atlas transform file
/subject/mri/transforms/talairach.xfm"
How can i
Dear experts,
I have suv data and I want to do pve using pet surfer. I have the following
questions and would appreciate your help:
1. The output of mgx is three maps mgx.{ctxgm,subctxgm,gm} these maps are pvc
corrected. I am wondering where can I find pvc corrected maps for whole brain
(white m
On 8/22/17 6:33 AM, Joudy.carter wrote:
Dear experts,
I have suv data and I want to do pve using pet surfer. I have the
following questions and would appreciate your help:
1. The output of mgx is three maps mgx.{ctxgm,subctxgm,gm} these maps
are pvc corrected. I am wondering where can I find
the aseg is provided in native space. the talairach transform is only
there to provide a like to talairach space if it is needed. so all you
need to do is to remove -notalairach
On 8/22/17 4:37 AM, Ritesh Mahajan wrote:
> Hello Team,
>
> I have run "recon-all -i subject.nii -s subject -all -not
Dear FS experts,
I ran voxel-wise analysis between two groups using randomise in FSL and the
final statistical maps is as attached.
I aim to to repeat the analysis using surface based analysis. I followed the
steps as in wiki. I am not sure what is the correct value for projfrac int he
command
Good afternoon,
I am new to Freesurfer and following the instructions to find out the Cortical
Thickness of a Volume-defined
ROI(http://surfer.nmr.mgh.harvard.edu/fswiki/VolumeRoiCorticalThickness),
everything goes well until step 4. Even if I try to use -reshape-factor 7 as
suggested, it resha
need more info, eg, what kind of map is that? what modality?
On 8/22/17 11:04 AM, John Anderson wrote:
Dear FS experts,
I ran voxel-wise analysis between two groups using randomise in FSL
and the final statistical maps is as attached.
I aim to to repeat the analysis using surface based analys
> Thank you for the response
>
> It is FDG SUV map
>
> need more info, eg, what kind of map is that? what modality?
>
>> Original Message
>> Subject: mri_vol2surf
>> Local Time: August 22, 2017 11:04 AM
>> UTC Time: August 22, 2017 3:04 PM
>> From: john.ande...@protonmail.com
>> T
Hi,
I uploaded some data last week because our institution was having Contrast
issues. I just wanted to send an e-mail to confirm that this information was
received since I have not heard back yet.
Thank you for your assistance!
Best,
Mackenzie Leavitt
___
probably youu'll want to sample it in the middle of the cortical ribbon,
so --projfrac 0.5
On 8/22/17 12:11 PM, John Anderson wrote:
Thank you for the response
It is FDG SUV map
need more info, eg, what kind of map is that? what modality?
Original Message
Subject: mri_
try it without doing any reshaping. If that works, then I'll edit the wiki
On 8/22/17 12:00 PM, Esteban, Eva(GE Healthcare) wrote:
Good afternoon,
I am new to Freesurfer and following the instructions to find
out the Cortical Thickness of a Volume-defined
ROI(http://surfer.
Hi Freesurfer experts,
A co-worker and I are having some issues figuring out a consistent Freesurfer
editing protocol. How many control points are generally needed for a T1 scan of
fair quality? Would there be a problem with consistency if one set of subjects
has 10-80 control points and anoth
Dear Allison,
The error happened in the old hippocampal subfield module. I would recommend
that you used the new hippocampal subfield code in FreeSurfer 6.0. Having said
that, if you really want to run the 5.3 subfield version, Koen Van Leemput
maybe knows what the problem might have been.
Kind
Hi,
I want to change the template when doing recon-all.
Is it possible? If it can, how can I do?
Tell me, please!
Thanks a lot!
YQ
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
14 matches
Mail list logo
