Dear freesurfer experts,
I am presently trying to calculate hippocampal volume for two different
study groups. One study group images (MDD) was acquired on 1.5T and the
other age-matched study group (Healthy controls) on 3T MRI. On doing the
statistics I have significant differences in the hippoca
I'll take a look, but in the future can you just send this as text
embedded in the email instead of screen shots.
thanks
Bruce
On Sat, 27 May 2017, Schumman
Resonance wrote:
Attached is the full command line; as per a screen output Freeview quits.I
have not tested all surface files, but Fr
actually the attachment doesn't have an extension, so I can't even look
at it. Can you just resend as text?
cheers
Bruce
On Sat, 27 May 2017, Schumman Resonance
wrote:
Attached is the full command line; as per a screen output Freeview quits.I
have not tested all surface files, but Freeview u
The error message says it:
ERROR: MRISread: file
'/Users/schumman/Non-Inf_FS_5_3/0002_WIP_3DT1_SAG_SENSE_3_1.nii/surf/lh.area.pial'
has many more faces than vertices!
Probably trying to use a scalar data file as a surface!
You were not loading a correct surface file. lh.area.pial is a scalar da
Thanks that makes sense!
here is the text file and embedded just in case there is anything else to it
Thanks!
"Last login: Sat May 27 20:26:15 on ttys000
freesurfer-Darwin-lion-stable-pub-v5.3.0
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applicatio
I am facing a similar issue with recon-all in FreeSurfer 6.0.0. on two subjects
from OASIS-Brains.
I will retry the run.
This is the last log entry:
mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta
/home/ubuntu/freesurfer/subjects/OAS1_0004_MR1/mri/transforms/cc_up.lta
OAS1_0004_MR1
This says the system's log:
May 29 03:34:08 neuroimaging01 kernel: [234004.243039] mri_cc[13706]: segfault
at c0 ip 7fb197611194 sp 7ffc908771b0 error 4 in
libc-2.23.so[7fb1975c4000+1bf000]
May 29 04:32:32 neuroimaging01 kernel: [237508.346011] mri_cc[13744]: segfault
at c0 ip 7f350
