Re: [Freesurfer] TRACULA trac-all preprocessing errors

Hello, Thanks for your reply, that was what I thought, But I just download the tutorial data, and followed your tutorial from this page https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Tracula FsTutorial/Tracula - Free Surfer Wiki

Re: [Freesurfer] TRACULA trac-all preprocessing errors

Hi Hao - That is strange, thank you for bringing this to our attention. The recons should be there. We're in the process of rerunning everything with version 6.0 in preparation for the release, so all this data will be updated. Thank you for your patience! a.y

[Freesurfer] Neighborhood of a vertex

Hi all, I have a 'lh.thickness.asc' file which contains thickness values of each vertex. The format of the file is following; However, x,y,z are not integer. What is the unit of the x,y,z values in the file? I am trying to find all the neighborhood of any given vertex as x,y,z -> x+1,y,

Re: [Freesurfer] Neighborhood of a vertex

Hi Onur for that you need a surface file. If you are using matlab you can load a surface file in with read_surf.m. The will then be an index into the surface (although note that you will need to add 1 to it since matlab is 1-based when you index into the vertex list). It will return a list o

Re: [Freesurfer] TRACULA trac-all preprocessing errors

Ok, so I will use my own recon-alled data to follow the tutorial and at the same time to wait for the new version of FreeSurfer Thanks De : freesurfer-boun...@nmr.mgh.harvard.edu de la part de Yendiki, Anastasia Envoyé : dimanche 18 décembre 2016 14:51 À :

[Freesurfer] Registering ASL-CBF maps to fsaverage

Hi, all. I want to register CBF maps derived using pCASL to freesurfer's surface and derive CBF values in the same regions where I report my cortical thickness, and volumes. Hence, I did the following: 1) bbregister --s T1_data --mov asldata_mc_even_brain.nii.gz --reg mean_asl_to_fs_T1 --bold --in

Re: [Freesurfer] minor edits to aseg lead to exist with errors in about 25% of my scans

sending this again as I have had no responses Thanks From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Lucette Cysique Sent: Wednesday, December 14, 2016 12:52:11 PM To: freesurfer@nmr.mgh.harvard.edu Cc: Madeleine Nichols (Redirection) Subject: [Freesur

[Freesurfer] 3d brain vessels visualisation

Hi Could you please help with this? I am able to create a 3D model of brain with T1 volume. I want to superimpose the surface vessels from a T1 GAD. How do i go about it? Thanks, Anand Anand Iyer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harva